FC925345
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12 Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 3 Query: 6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKD 413 +K L++ S+V+ + I + IGC M+G IADAR V AR E + G PM + + + ++A + + RP GV++ L+A DE GPSL+ DP+G + A + G + L++++ KD Sbjct: 51 QKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA---QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12 Identity = 48/182 (26.37%), Postives = 91/182 (50.00%), Query Frame = 3 Query: 39 SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYN--KDLTLQEAETIALSILKQVM--EEKVTPNNVDIARVA--PTYHLYTPSEVEAVINRL 566 S +K+ EID H G +++GL++D R L + + E + R+ Y + + ++ +++ L+ + RPFGV +LIAG D++G + TDPS + +IG+ S+ A + L+ + + T ++ AL L+ + EE + N I V + L ++V +N++ Sbjct: 58 SHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESM---QLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQVAVHLNQV 236
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11 Identity = 41/136 (30.15%), Postives = 65/136 (47.79%), Query Frame = 3 Query: 6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK 410 +K LL+P++V I I IG ++G I DAR A+ E R+ YG M + + + +L+ + + + RP GV L DE GPS+Y TDP+G + A A G + ++L+ + K Sbjct: 56 QKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIY---TQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 188
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11 Identity = 49/194 (25.26%), Postives = 92/194 (47.42%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLL-IAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566 V+K L+ +V + +I + +GC G+I DA+ ++ A+ E + ++ G M E + + DL + + E R G +LL I+ DE GP +Y DP+G + ++G A S L+++ K +LT EA +A+ L+ + V ++++ V + T +VE +N++ Sbjct: 52 VQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAE---MRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHHLNQI 242 The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bpback to top |