FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:232..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.667e-31
Identity = 74/184 (40.22%), Postives = 113/184 (61.41%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554
            V++  TS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGS    A   L+ +Y++D+T+ E   +AL  L +  EE + P N+D+A V  +  L     V+ +
Sbjct:   52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 78/191 (40.84%), Postives = 112/191 (58.64%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566
            VEK  TS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q HR +YGEP  +    + +CDL        +    RPFG +LL+AG +E  P LY TDPSG ++   A AIGS    A +  +E+Y  D++L+EA  +A+  L + M EK +  N+++A +      +   +  E+E  +N +
Sbjct:   52 VEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTM-EKPSAENIEVAIITVKDKKFRKLSREEIEKYLNEV 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 72/184 (39.13%), Postives = 113/184 (61.41%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554
            V++  TS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGS    A   L+ +Y++++T+ E   +AL  L +  EE + P N+D+A +  +  L     V+ +
Sbjct:   52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEE-LKPENIDMAIIKDSGKLVEKISVDEI 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 73/184 (39.67%), Postives = 113/184 (61.41%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554
            V++  TS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGS    A   L+ +Y++++T+ E   +AL  L +  EE + P N+D+A V  +  L     V+ +
Sbjct:   52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30
Identity = 72/184 (39.13%), Postives = 112/184 (60.87%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554
            V++  TS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGS    A   L+ +Y++++ + E   +AL  L +  EE + P N+D+A V  +  L     V+ +
Sbjct:   52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  TS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q HR +YGEP  +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG ++   A AIGS    A +  +++Y  D+TL EA  +A+  L + M EK +  N+++A
Sbjct:   52 VEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTM-EKPSAENIEVA 213          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            VEK  TS L+EPSS EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG +E  P LY TDPSG +++  A AIGS    A +  +E Y+ D+ ++ A  +A+  L + +EE  +P ++++A +
Sbjct:   52 VEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEP-SPESIEVAYI 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 68/166 (40.96%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDI 500
            V++  TS L++  S+EKI +ID+H+  A SGL+ADAR L++ AR+E Q +R +YGE +++E   + +CD+   +    +    RPFGVSLLIAG D+N   L+ TDPSG   +  A AIGS        L+++Y  D+TL E   +A++ L +  E+ + P NVD+
Sbjct:   51 VDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY---TQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDV 212          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 512
            +K   SPL+EP+SVEKI + D+HIG A +G +ADAR L++ AR ++Q +R  YGEP+ +E+ T+ + D   ++    +   +RPFGV+LLI G +   P LY TDPSGT ++  A +IG+        L+E +  DLTL E   +AL  +    +E   P+ VD+A V+
Sbjct:   53 DKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQY---TQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEGTAPDGVDVATVS 218          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566
            VEK  TS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q +R +YGEP  V    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG ++   A AIGS    A +  +E+Y  D+ L++A  +AL  L + ME   + +N+++A +      +   T  E+E  ++ +
Sbjct:   52 VEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMH---TQYGGVRPFGAALLMAGINDR-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENP-SADNIEVAVITVKDKKFRKLTRDEIEKYLSEV 237          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_METM51.667e-3140.22Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_PYRHO6.334e-3140.84Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_METMP6.334e-3139.13Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM76.334e-3139.67Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM63.143e-3039.13Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_PYRAB4.105e-3044.31Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THEGJ5.362e-3042.60Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METJA5.362e-3040.96Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA1_HALVO7.003e-3040.83Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_PYRFU9.146e-3039.79Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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