FC925345
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.667e-31 Identity = 74/184 (40.22%), Postives = 113/184 (61.41%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554 V++ TS L++ SS+EKI +ID+HI A SGL+ADAR L++ AR+E Q +R SYGE +TVE+ + +CD+ + + +RPFG++LLI G D + L+ TDPSG + A AIGS A L+ +Y++D+T+ E +AL L + EE + P N+D+A V + L V+ + Sbjct: 52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31 Identity = 78/191 (40.84%), Postives = 112/191 (58.64%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566 VEK TS L+EP S EKI +ID+HI A SG+IADAR LV AR+E Q HR +YGEP + + +CDL + RPFG +LL+AG +E P LY TDPSG ++ A AIGS A + +E+Y D++L+EA +A+ L + M EK + N+++A + + + E+E +N + Sbjct: 52 VEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTM-EKPSAENIEVAIITVKDKKFRKLSREEIEKYLNEV 237
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31 Identity = 72/184 (39.13%), Postives = 113/184 (61.41%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554 V++ TS L++ SS+EKI +ID+HI A SGL+ADAR L++ AR+E Q +R SYGE +TVE+ + +CD+ + + +RPFG++LLI G D + L+ TDPSG + A AIGS A L+ +Y++++T+ E +AL L + EE + P N+D+A + + L V+ + Sbjct: 52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEE-LKPENIDMAIIKDSGKLVEKISVDEI 231
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31 Identity = 73/184 (39.67%), Postives = 113/184 (61.41%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554 V++ TS L++ SS+EKI +ID+HI A SGL+ADAR L++ AR+E Q +R SYGE +TVE+ + +CD+ + + +RPFG++LLI G D + L+ TDPSG + A AIGS A L+ +Y++++T+ E +AL L + EE + P N+D+A V + L V+ + Sbjct: 52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.143e-30 Identity = 72/184 (39.13%), Postives = 112/184 (60.87%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554 V++ TS L++ SS+EKI +ID+HI A SGL+ADAR L++ AR+E Q +R SYGE +TVE+ + +CD+ + + +RPFG++LLI G D + L+ TDPSG + A AIGS A L+ +Y++++ + E +AL L + EE + P N+D+A V + L V+ + Sbjct: 52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEE-LKPENIDMAIVKDSGKLVEKISVDEI 231
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30 Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503 VEK TS L+EP S EKI +ID+HI A SG+IADAR LV AR+E Q HR +YGEP + + +CDL + RPFG +LL+AG ++ P LY TDPSG ++ A AIGS A + +++Y D+TL EA +A+ L + M EK + N+++A Sbjct: 52 VEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTM-EKPSAENIEVA 213
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30 Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509 VEK TS L+EPSS EKI +ID+HI A SG+IADAR LV+ AR+E Q +R +YGEP+ + + +CDL + RPFG +LL+AG +E P LY TDPSG +++ A AIGS A + +E Y+ D+ ++ A +A+ L + +EE +P ++++A + Sbjct: 52 VEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEP-SPESIEVAYI 215
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30 Identity = 68/166 (40.96%), Postives = 104/166 (62.65%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDI 500 V++ TS L++ S+EKI +ID+H+ A SGL+ADAR L++ AR+E Q +R +YGE +++E + +CD+ + + RPFGVSLLIAG D+N L+ TDPSG + A AIGS L+++Y D+TL E +A++ L + E+ + P NVD+ Sbjct: 51 VDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY---TQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDV 212
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30 Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 3 Query: 6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 512 +K SPL+EP+SVEKI + D+HIG A +G +ADAR L++ AR ++Q +R YGEP+ +E+ T+ + D ++ + +RPFGV+LLI G + P LY TDPSGT ++ A +IG+ L+E + DLTL E +AL + +E P+ VD+A V+ Sbjct: 53 DKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQY---TQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEGTAPDGVDVATVS 218
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30 Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566 VEK TS L+EP S EKI +ID+HI A SG+IADAR LV AR+E Q +R +YGEP V + +CDL + RPFG +LL+AG ++ P LY TDPSG ++ A AIGS A + +E+Y D+ L++A +AL L + ME + +N+++A + + T E+E ++ + Sbjct: 52 VEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMH---TQYGGVRPFGAALLMAGINDR-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENP-SADNIEVAVITVKDKKFRKLTRDEIEKYLSEV 237 The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bpback to top |