FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:232..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 71/169 (42.01%), Postives = 107/169 (63.31%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            VEK  TS L+EPSS EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG +++  A AIGS    A +  ++ Y+ DL ++ A  +A+  L + +EE  +P ++++A +
Sbjct:   52 VEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEP-SPESIEVAYI 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINR 563
            +K   S LLE  ++EKI +IDEHI  A SGL+ADAR L++ AR+E Q +R +Y EP+TV+   + +CD   ++    +    RPFGVSLLIAG DE  P LY TDPSG   +  A AIG          +++Y  DL+  +A  + L  +   +E ++ P N+++  V     T+   +P E++  + R
Sbjct:   51 DKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQY---TQYGGVRPFGVSLLIAGVDE-VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVER 235          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 71/191 (37.17%), Postives = 109/191 (57.07%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566
            V+K  TS L+E  S+EKI +ID+HIG A SGL+ADAR+LV+ ARVE Q +R SY EP+ VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG   +  A AIG+         + +Y +D+ +  A  + +  L +  E K   + +++  V+     +    P EVE  + ++
Sbjct:   51 VDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAEGKFDASTLEVGIVSLQDKKFRKLVPEEVENYVQQI 238          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 72/191 (37.70%), Postives = 107/191 (56.02%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566
            V+K  TS L+E  S+EKI +IDEHIG A SGL+ADAR+LV+ ARVE Q +R SY EP+ VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG   +  A AIG+         +  Y +D+ +  A  + +  L +  E K     +++  V+     +    P EVE  + ++
Sbjct:   49 VDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYVQQI 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 67/169 (39.64%), Postives = 106/169 (62.72%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 512
            +K   SPL+EP+SVEKI + D+H+G A +G +ADAR L++ AR + Q +R  YGEP+ +E+ T+ + D   ++    +   +RPFGV+LLI G ++  P LY TDPSGT ++  A +IG+        L+E Y ++L+L E   +AL  +    ++++T   VD+A VA
Sbjct:   53 DKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQY---TQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDELTAAGVDVATVA 218          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARVAPT------YHLYTPSEVEAVI 557
            EK  TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + F Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G++++ A S L++ Y  D T +EA  +AL +L + M+   +T   +++A V  T      YH+++P  +  ++
Sbjct:   48 EKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDSTSLTSEKLELAEVYLTPSKTVKYHVHSPESLTKLL 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.321e-28
Identity = 66/188 (35.11%), Postives = 108/188 (57.45%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP-TYHLYTPSEVEAVINRL 566
            EK  TSPL +  ++ K+  +D+H+GC  SG+  D R LV+ AR   Q +R +Y EPM +   +Q +  ++  F E  +    RPFG SLL+AG+D  G  LY  DPSGTFW   A +IG  S  A + L+++Y  ++ +++A   AL  LK+  + ++T  N  + RV    + L T  +++  ++++
Sbjct:   47 EKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPI---SQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDGRMTAENTQVGRVVEGRFELLTVEQLKDYLDQI 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 3
Query:   21 SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            SPL+E  S+EKI EID H+G A +G +ADAR L++ AR ++Q +R  Y EP +VES T+ + D   ++    +   +RPFGV+LL+AG ++  P L+ TDPSGT ++  A AIG S E   + L+E+Y + + L+    +AL  L  V E+ +    VDIA +
Sbjct:   57 SPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQY---TQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATI 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 71/171 (41.52%), Postives = 106/171 (61.99%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 509
            EK  TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + FSY EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +    A AIG++++ A S L++ Y  D+T ++A  +AL  L + M+   +T   +++A V
Sbjct:   48 EKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDSTSLTSEKLELAEV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 73/191 (38.22%), Postives = 107/191 (56.02%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVINRL 566
            V+K   S LLEPSS+EKI +ID HIG A SGL+ DAR+LV+ ARVE+Q +R SY E + VE  ++ LCD    +    +   +RP+G +LLIAG  +    L+ TDPSGT  +  A  IG          +E+YN + ++++A  + L  L    E K   N V+I  V    P +   +  EV + + ++
Sbjct:   51 VDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTY---TQFGGARPYGTALLIAGISDGQFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKALHAATEGKFDVNTVEIGVVNNDTPAFRKMSRQEVASFVEQI 238          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_THEON1.194e-2942.01Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_ARCFU1.560e-2938.10Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_METBF2.661e-2937.17Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC2.661e-2937.70Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_HALWD4.539e-2939.64Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA4_ARATH7.742e-2937.82Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA2_TRYBB1.321e-2835.11Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSMA2_HALMA1.725e-2841.72Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA4_SPIOL1.725e-2841.52Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSMA_METPE2.253e-2838.22Proteasome subunit alpha OS=Methanosphaerula palus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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