FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:232..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.491e-27
Identity = 63/167 (37.72%), Postives = 101/167 (60.48%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 500
            EK     LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG     A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   53 EKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            V+K   SPL+E +SVEKI + D+HIG A +G +ADAR L++ AR + Q ++  Y EP+ VE+ T+A+ D   ++    +   +RPFGV+L+I G ++  P LY TDPSGT ++  A A+G+        L+E Y++ L  +    +AL  L  V ++ +TP  + +A V
Sbjct:   52 VDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQY---TQVGGARPFGVALIIGGIEDGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATV 217          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27
Identity = 71/195 (36.41%), Postives = 105/195 (53.85%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL*VSRENH 587
            V+K  TS L+E  S+EKI +ID+HIG A SGL+ADAR LV+ ARVE Q +R SY E + VE  ++ +CD    +    +    RP+G +LLIAG D+  P L+ TDPSG   +  A AIG+         +  Y +D+ ++ A  + +  L +  E K     +++  V+     +   E E V N +    E H
Sbjct:   49 VDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSLQDKKFRKLEPEEVGNYVQQILEKH 240          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 512
            V+K  TS LLEP S+EKI +ID HIG A SGL+ DAR+LV+ ARVE+Q +R SY EP+ VE   + LCD    +    +   +RP+G +LLIAG  +    L+ TDPSGT  +  A  IG+       + +++Y +D     A  + +  L    E K+  + ++I  V+
Sbjct:   51 VDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTY---TQFGGARPYGTALLIAGVSDGEARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKALHAATEGKLDVSAIEIGVVS 217          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 70/169 (41.42%), Postives = 95/169 (56.21%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            V+K  +S LLE SS+EKI +IDEHIG A SGL+ DAR LV+ AR+E Q +R SY E + VE+  + LCD         +    RP+G +LLIAG  +    L+ TDPSGT  +  A  IG     A    +E+Y  DL L++A  + L  L    E K   + V++  V
Sbjct:   51 VDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCD---HMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATEGKFDVDTVEMGIV 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.614e-26
Identity = 62/167 (37.13%), Postives = 100/167 (59.88%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 500
            EK     LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P L+ T+PSG +    A AIG     A   L++ Y +DL ++E   +AL  L   ++  EK+TPN V+I
Sbjct:   53 EKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPN-NVDIA 503
            EK   S L + SS+EKI  IDEH+  + SGL+ADAR L+++AR    +HRF Y EP+ VE  T+A+C+L  ++    +   +RPFGV+LLIAG D +G  LY TDPSG +    A AIG+ S      L++ Y  D+ + E   +AL  L   +E  +T + NV++A
Sbjct:   52 EKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQY---TQFGGARPFGVALLIAGVDRHGARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVE--ITDSANVEVA 213          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 509
            EK  TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G++S+ A S L++ Y   LT +EA  +AL +L + M+   +T   +++A V
Sbjct:   48 EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 509
            EK  TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G++S+ A S L++ Y   LT +EA  +AL +L + M+   +T   +++A V
Sbjct:   48 EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.697e-26
Identity = 67/193 (34.72%), Postives = 109/193 (56.48%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSIL----KQVMEEK-----VTPNNVDIARVAPTYHLYTPSEVEAV 554
            EK F  PL++   ++KI +ID+HIG A +G+  D R L+++ARV T  HR  YGEP  VE   + + D+   +    +    RPFGV+L+ AG + +G + +Y TDP G ++   A AIGS  + A+   ++ Y  D++L+EA  +AL IL    ++ +E+K       P+ V++A +     ++T    E V
Sbjct:   55 EKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAY---TQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYITVKERMFTKMTKEQV 244          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_SULIA2.491e-2737.72Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_NATPD3.253e-2738.46Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METTE5.548e-2736.41Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METMJ5.548e-2739.41Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METB69.464e-2741.42Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_SULSO1.614e-2637.13Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_PYRAE2.108e-2642.51Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSA4B_ORYSJ3.596e-2639.77Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI3.596e-2639.77Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSMA_AERPE4.697e-2634.72Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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