FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:232..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 500
            EK   S LL+  S+EK+  +D+H+GC+ +GL +D R L+++AR  +  HR  Y EP++++  T+ + D+   +    +    RPFGV+L++ G D     L+ T+PSG F    A AIG     A   L++ Y +DL+++E   +AL+ LK  ++  EK+ P NV+I
Sbjct:   53 EKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMY---TQHGGVRPFGVALIVGGVDRGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTLKPGEKLGPGNVEI 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 509
            EK  TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G++S+ A S L++ Y   +T +EA  +AL +L + M+   +T   +++A V
Sbjct:   48 EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 509
            EK  TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G++S+ A S L++ Y   +T +EA  +AL +L + M+   +T   +++A V
Sbjct:   48 EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 73/187 (39.04%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESM--SRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLY-TPSEVEAVI 557
            EK   S L  P SV K  +I +HI    SG+  D +T+V+ +R    +H   YGE ++VE   + L  L+LRFGE DE  M   RPFGVSL+IAG D   P LY  DPSG++    AKAIGS  E  +  L+ +Y +   L ++    L  L +VM++K++ +NV++  V      + TP EV   +
Sbjct:   47 EKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE-PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVMKDKISKDNVEVVVVTQEESKFLTPEEVSVYL 232          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 70/189 (37.04%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVIN 560
            V+K   SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT  +  A AIGS+       L+++Y+  L++ +   +AL  L +  E+ ++ + V +  V     TY      E ++ I+
Sbjct:   52 VDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTGTYRELAADESQSYID 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 70/189 (37.04%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVIN 560
            V+K   SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT  +  A AIGS+       L+++Y+  L++ +   +AL  L +  E+ ++ + V +  V     TY      E ++ I+
Sbjct:   52 VDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTGTYRELAADESQSYID 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.976e-25
Identity = 65/183 (35.52%), Postives = 103/183 (56.28%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 548
            +K   S L+E +S+EKI  ID+++    SGL+ADAR LV+ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT  +  A AIGS  +   S L+ +Y ++L  +EA T+ +  LK  +EE       +IA   V   Y +Y   EV+
Sbjct:   51 DKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVK 230          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 64/183 (34.97%), Postives = 104/183 (56.83%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 548
            +K   S L+E +S+EKI  ID+++    SGL+ADAR L++ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT  +  A AIGS  +   S L+++Y + L+ +EA T+ +  LK  +EE       +IA   V   Y +Y   EV+
Sbjct:   51 DKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLEEGEELKAPEIASITVGSKYRIYGAEEVK 230          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 62/183 (33.88%), Postives = 105/183 (57.38%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA--PTYHLYTPSEVE 548
            EK   S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G +   A + L+++Y +D+ L +A   A+  LK+  E +++  N++I ++     + + TP+E++
Sbjct:   49 EKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEID 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 62/183 (33.88%), Postives = 105/183 (57.38%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA--PTYHLYTPSEVE 548
            EK   S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G +   A + L+++Y +D+ L +A   A+  LK+  E +++  N++I ++     + + TP+E++
Sbjct:   49 EKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEID 228          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_METS56.135e-2635.93Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA4A_ORYSJ6.135e-2639.18Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI6.135e-2639.18Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA5_ENCCU8.012e-2639.04Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSMA_HALSA1.046e-2537.04Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.046e-2537.04Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_THEAC3.976e-2535.52Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_THEVO5.193e-2534.97Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSA2B_ARATH1.511e-2433.88Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH1.511e-2433.88Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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