FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.973e-24
Identity = 59/187 (31.55%), Postives = 107/187 (57.22%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVIN 560
            EK   S L+E +S+EKI  ID+ +    SGL+ADAR L++ AR+  Q  + +YG  M +E+  + + D   ++    +    RP+GVS++ AG D  GP L+  DP+GT  +    +IG+  +   + L+++Y ++L+  EA  + ++ LK  + ++ +    +IA  ++  T+H++T  EV   +N
Sbjct:   51 EKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQY---TQYGGVRPYGVSIIFAGLDSIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADESSMKEPEIASIKMGETFHVFTSEEVSKYLN 234          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.366e-24
Identity = 67/196 (34.18%), Postives = 108/196 (55.10%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL*VSRE 581
            VEK   + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT+    A AIG S++     L++ Y +D    + E I L+I  L +V++       + I R      +++  EVE  +  +   +E
Sbjct:   47 VEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKE 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.396e-24
Identity = 70/202 (34.65%), Postives = 112/202 (55.45%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSV--EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAI-GSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVTPNNVDIARVAP-----TYHLYTPSEVEAVINRL*VSRE 581
            EK  T+ LL+ S+   EK+ +IDEH+ CA++G+ +DA  L+ +AR+ +Q   + Y EPM VE     +CD    +    +    RPFGVS L AG D + G  LY +DPSG F    A +I G +S+ A S L+  Y  D++L+EA  +AL +L + M+   +    ++ +          YH++T +E++A I    + +E
Sbjct:   48 EKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGY---TQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFSYFTKQGDNVVYHIFTAAELDAFIKETDLEQE 246          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.742e-24
Identity = 65/191 (34.03%), Postives = 107/191 (56.02%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 566
            VEK   + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT+    A AIG S++     L++ Y +D    + E I L+I  L +V++       + I R      +++  E+E  ++ +
Sbjct:   47 VEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEI 234          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.742e-24
Identity = 65/183 (35.52%), Postives = 105/183 (57.38%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 548
            EK   S L++ +SV+KI  +  +IG   SG+  D R LV  +R + Q +   Y E + V   TQ + + A    E  +    RPFGVSLLIAG D+NGP LY  DPSG+++   A A+G +   A + L+++Y +D+ L +A   A+  LK+  E +++ NN++I   R    + + +P+E++
Sbjct:   49 EKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIK 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.742e-24
Identity = 65/183 (35.52%), Postives = 105/183 (57.38%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 548
            EK   S L++ +SV+KI  +  +IG   SG+  D R LV  +R + Q +   Y E + V   TQ + + A    E  +    RPFGVSLLIAG D+NGP LY  DPSG+++   A A+G +   A + L+++Y +D+ L +A   A+  LK+  E +++ NN++I   R    + + +P+E++
Sbjct:   49 EKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIK 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.279e-23
Identity = 71/189 (37.57%), Postives = 107/189 (56.61%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG--PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHL--YTPSEVEAVI 557
            VEK  T  L +  SV KI+ +D+HI  A +GL ADAR LV  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D +   PSLY TDPSGTF    A A G +S      L++ Y K+ + QE   +A+  L +V+E      N+++A +   + L     +E++A++
Sbjct:   46 VEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNY-KETSGQETVKLAIRALLEVVES--GGKNIEVAVMTKEHGLKQLEEAEIDAIV 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.671e-23
Identity = 68/170 (40.00%), Postives = 97/170 (57.06%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQN-HRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 512
            EK  TS L   +S+EK+  I   IG   SG+  D R LV+ +R   Q  ++  Y E    +   Q   ++A    E  +    RPFGVSLL+AG DE GPSLY  DPSGT++   A AIG SS  A + L+++YN +L L +A   A+  LK+  E ++T +N++IA V+
Sbjct:   48 EKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQ---EIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVS 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.722e-23
Identity = 70/189 (37.04%), Postives = 106/189 (56.08%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHL--YTPSEVEAVI 557
            VEK  T+ L +  SV KI+ +D+HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G +S      L++ + K+ + QE   +A+  L +V+E      N+++A +     L     +E++A++
Sbjct:   46 VEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNF-KETSGQETVKLAIRALLEVVES--GGKNIEVAVMTKENGLRQLEEAEIDAIV 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.722e-23
Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK   + L E  +V KI  +DEH+  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG S++     L++ Y  +    + + I L+I   +   +    N+++A
Sbjct:   47 VEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQSGGKNIELA 211          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_PICTO1.973e-2431.55Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA7L_MACFA3.366e-2434.18Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA4_DICDI4.396e-2434.65Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA7L_MOUSE5.742e-2434.03Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA2_ORYSJ5.742e-2435.52Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI5.742e-2435.52Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA7_SOLLC1.279e-2337.57Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA2_SCHPO1.671e-2340.00Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA7_CICAR3.722e-2337.04Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7_CARAU3.722e-2337.50Proteasome subunit alpha type-7 OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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