FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.722e-23
Identity = 67/171 (39.18%), Postives = 97/171 (56.73%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 515
            EK  +SPL +PSS+ KI  I  +IG   SG+  D R LV+ AR V    ++  Y E        Q   D+A    E  +    RP+GVSLLIAG DE GP LY  DPSG+++   A AIG ++  A + L+++Y + L L++A  IAL  LK+ +E ++  + ++I  V P
Sbjct:   48 EKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQ---DVARVMQEATQSGGVRPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEGEMNGDTIEIGIVGP 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.861e-23
Identity = 61/176 (34.66%), Postives = 106/176 (60.23%), Query Frame = 3
Query:   27 LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVE 548
            L++ +SV+KI  I E+IG   +G+  D+R L++ AR E++ +   Y E + V    Q + +LA    E  +    RPFGVSLL+AG DE GP LY  DPSG+++   A AIG +   + + L+++Y+ DL +++A   AL  +K+  E ++T  N+++A +     + + TP++++
Sbjct:   54 LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPV---LQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFETQLTEFNMELAIIGKNQEFKILTPAQIK 226          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.348e-23
Identity = 64/191 (33.51%), Postives = 108/191 (56.54%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEAVINRL 566
            +K  T   + P +V  +  I + IGCAM+G IAD+R+ V+ AR E  N R+ YG  M V+   + + D+   + +  E    RP G S+ LIA  +E GPS+Y TDP+G F    A ++G+ +  A+S L+++Y  +L+ ++A  +A+S L  V+     PN ++I  V+   PT+ +    E+E  + ++
Sbjct:   53 QKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAE---MRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKI 240          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.083e-22
Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 500
            EK   + LL+  S+EK+  +D+H+GC+ +GL +D R L+++AR +   HR  Y EP+ ++  T+ + D+   +    +    RPFGV+L+I G D    P L  T+PSG F    A AIG     A    ++ Y +DL +Q+   + +  L   ++  EK+ P+N+++
Sbjct:   53 EKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMY---TQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEV 217          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.414e-22
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 3
Query:   21 SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            S L+E  S+EK+ ++D+ +G A +G +ADAR LV+ AR   Q     YGEP+ VE+ T+ + D      E  +   +RP+G SLLI G +     L+ TDPSGT  +  A AIG   E   ++L++ Y +DL+L++   +A+  L    EE
Sbjct:   57 SELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITD---NIQESTQSGGTRPYGASLLIGGVENGSGRLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAADEE 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.847e-22
Identity = 61/165 (36.97%), Postives = 91/165 (55.15%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDI 500
            E    SPL E  SV ++  I  HIG   SG+  D R LV+ AR   Q +  +Y EP+ V    Q +  L   +    +    RPFGVSLLI G D + P LY +DPSG ++   A A+G ++    + L+++Y++DL L +A   A+  LK+  E K+T +N++I
Sbjct:   49 ENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEY---TQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGKMTADNIEI 210          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.151e-22
Identity = 58/168 (34.52%), Postives = 94/168 (55.95%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 500
            EK   + LL+   +EKI  +D+H+GC  +GL +D R L+++AR +   HR  Y EP+++E  T+ + D+   +    +    RPFGV+L++ G D+   P L  T+PSG F    A AIG     A   L++ Y +DL +Q    +AL  L   ++  EK+  ++V+I
Sbjct:   53 EKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAY---TQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEKLNYSSVEI 217          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  D    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 69/193 (35.75%), Postives = 104/193 (53.89%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG--PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA---RVAPTYHLYTPSEVEAVINRL 566
            VEK  T  L +  S  KI+ +D HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G +S      L++ Y K+ + QE   +A+  L +V+E      N+++A   R          +E++A++ ++
Sbjct:   46 VEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KESSGQETIKLAIRALLEVVES--GGKNIEVAVMTREETGLRQLEEAEIDAIVAKI 232          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 66/199 (33.17%), Postives = 104/199 (52.26%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA---RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+    +    RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++      ++ Y  +    +  TI L I   +   +    N+++A   R  P   L +P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY---TQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILTSPEEIEKYVAEIEKEKEEN 240          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA2_NEUCR3.722e-2339.18Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA2_DICDI4.861e-2334.66Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA6_DROME6.348e-2333.51Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSMA_SULTO1.083e-2232.74Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA2_HALVO1.414e-2237.75Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA2_DROME1.847e-2236.97Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA_SULAC3.151e-2234.52Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA7_MOUSE4.115e-2233.33Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7B_ARATH4.115e-2235.75Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7_CHICK5.374e-2233.17Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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