FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 67/202 (33.17%), Postives = 109/202 (53.96%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMS------GLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL*VSRE 581
            VEK   + L +  +V KI  +D+H+  A +      GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G S LY TDPSGT+    A AIG S++     L++ Y +D    ++E I L+I  L +V++       + I R      +++  EVE  +  +   +E
Sbjct:   47 VEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKE 245          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.019e-22
Identity = 65/198 (32.83%), Postives = 105/198 (53.03%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    +  TI L I   +   +    N+++A  R   +  +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T  L +  S+ KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     P+LY TDPSGTF    A A G +S      L++ Y KD + +E   +A+  L +V+E      N++IA
Sbjct:   46 VEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKETIKLAIRALLEVVES--GGKNIEIA 208          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T  L +  S+ KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     P+LY TDPSGTF    A A G +S      L++ Y KD + +E   +A+  L +V+E      N++IA
Sbjct:   46 VEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKETIKLAIRALLEVVES--GGKNIEIA 208          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 68/204 (33.33%), Postives = 107/204 (52.45%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCA------MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A      +SGL ADAR ++  ARVE Q+HR + G+P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  D    +  TI L I   +   +    N+++A  R      + +P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILSPEEIEKYVAEIEKEKEEN 245          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 65/198 (32.83%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDI 500
            EK   S L +  SV KI  I +HIG   SG+  D R LV  AR   Q +   Y EP+      Q +  +   +    +    RPFGVSLLIAG DE+ P L+ +DPSG ++   A A+G S     + L+++YN+DL L++A   A+  LK+  E ++T  N+++
Sbjct:   49 EKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEY---TQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEENIEV 210          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.564e-21
Identity = 58/168 (34.52%), Postives = 95/168 (56.55%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK     L +  ++ KI  ID+H+  A +GL ADAR LV+ AR+E Q+++ +  +P+TV   ++ + +   RF +       RPFG+S+LI G D +G P L+ T+PSG +++  A A G   +     L+EQY+++ T+ EA T+ L +            N++IA
Sbjct:   46 VEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGR---RPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQNIEIA 210          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA7L_HUMAN5.374e-2233.17Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA7B_XENLA5.374e-2233.33Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA5.374e-2233.33Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7_HUMAN7.019e-2232.83Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7A_ORYSJ9.167e-2239.64Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI9.167e-2239.64Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7_RAT1.197e-2133.33Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_BOVIN1.197e-2132.83Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA2_CARAU1.197e-2136.97Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA7_CAEEL1.564e-2134.52Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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