FC925351

Overview
NameFC925351
Unique NameFC925351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14687 contig Ccv1_Contig14687:621..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: KCC2D_BOVIN (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Bos taurus GN=CAMK2D PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 2 
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRG--DFKCPPW--FSSEARRLITKLLDPNPNSRIAISKIMESSWF-KKSAPKVVITKQE 262
            D+W+CGVILY+LL G+ PF D++   +Y++I  G  DF  P W   + EA+ LI K+L  NP  RI  S+ ++  W  ++S    ++ +QE
Sbjct:  196 DMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQE 286
[Close]
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: CDPK8_ARATH (Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRG--DFKCPPW--FSSEARRLITKLLDPNPNSRIAISKIMESSWFK--KSAPKV 244
            DIWS GVILY+LL G  PF  +    + + I R   DFK  PW   S  A+ L+ K+L+P+P  R++ ++++E SW +  K AP V
Sbjct:  239 DIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPRVSETAKDLVRKMLEPDPKKRLSAAQVLEHSWIQNAKKAPNV 324
The following BLAST results are available for this feature:
BLAST of FC925351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
KCC2D_BOVIN9.416e-1139.56Calcium/calmodulin-dependent protein kinase type I... [more]
CDPK8_ARATH9.416e-1141.86Calcium-dependent protein kinase 8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG18FM1 TF Citrus clementina cDNA clone KN0AAP3YG18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925351 ID=FC925351; Name=FC925351; organism=Citrus clementina; type=EST; length=645bp
GGCCGATATTTGGTCTTGTGGGGTCATTCTTTACGTGTTGTTAGCAGGTT
TCTTGCCATTCCAGGATGATAATATCGTGTCCATGTATCGGAAGATTTAC
AGGGGAGATTTCAAGTGCCCGCCTTGGTTTTCATCTGAAGCGAGGAGGTT
GATCACCAAGCTTCTCGATCCAAACCCTAACTCAAGAATCGCTATTTCAA
AGATCATGGAGTCTTCTTGGTTCAAAAAGTCTGCTCCCAAGGTTGTGATA
ACTAAGCAAGAGATGGAATTTGAAGCTGACAAGTCATCAAAGCAACCTGA
GACTCTAAATGCGTTTCATATCATCTCTTTGTCGGAAGGGTTTGATTTGT
CACCTTTGTTTGAGGAGAAAAAGAGAGCGGAAAGAGAGGAGCTGAGATTT
GCAACCACGAGGCCTGCAAGCAGTGTGATCTCAAGATTTGAAGAGGTGGC
CAAGGCCGTTAAGTTTAATGTCAAAACGAGCGAGTCAAGAGTCAGATTAC
AAGGCCAAGAAAGCGGAAGGAAAGGCAAATTGGCTATCAATGCTGACATC
TTTGCCGTTACACCGTCGCTTTTGGTGGTGGAAGTGAAGAAACATAATGG
TGATACATTGGAGTACAATCAATTCTGTAACAACGAGCTTCGGCC
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