FC925351

Overview
NameFC925351
Unique NameFC925351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: SNF1_YEAST (Carbon catabolite-derepressing protein kinase OS=Saccharomyces cerevisiae GN=SNF1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVVI 250
            D+WSCGVILYV+L   LPF D++I  +++ I  G +  P + S  A  LI ++L  NP +RI+I +IM+  WFK   P+ ++
Sbjct:  234 DVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEYLL 315          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: HSL1_YEAST (Probable serine/threonine-protein kinase HSL1 OS=Saccharomyces cerevisiae GN=HSL1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    2 ADIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKK 229
            +D+WSCG++L+ LL G LPF DDNI  +  K+  G ++ P   SSEAR LI+K+L  +P  RI   +I++    KK
Sbjct:  296 SDVWSCGIVLFALLTGHLPFNDDNIKKLLLKVQSGKYQMPSNLSSEARDLISKILVIDPEKRITTQEILKHPLIKK 371          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK1_MOUSE (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Mus musculus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPK 241
            DIWS GVILY LL G LPF DD++ ++++KI  G F  P + +     L+  +L  +P  R AI  I E  WFK+  PK
Sbjct:  207 DIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRAAIKDIREHEWFKQDLPK 285          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Pongo abelii GN=PRKAA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAP 238
            DIWSCGVILY LL G LPF D+++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  P
Sbjct:  196 DIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Sus scrofa GN=PRKAA2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAP 238
            DIWSCGVILY LL G LPF D+++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  P
Sbjct:  196 DIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_MOUSE (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Mus musculus GN=Prkaa2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAP 238
            DIWSCGVILY LL G LPF D+++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  P
Sbjct:  196 DIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPDYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Homo sapiens GN=PRKAA2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAP 238
            DIWSCGVILY LL G LPF D+++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  P
Sbjct:  196 DIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Rattus norvegicus GN=Prkaa2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAP 238
            DIWSCGVILY LL G LPF D+++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  P
Sbjct:  196 DIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSIATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: PPK1_SCHPO (Serine/threonine-protein kinase ppk1 OS=Schizosaccharomyces pombe GN=ppk1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 ADIWSCGVILYVLLAGFLPFQDD-------NIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFK 226
            ADIWSCGVILY +LAG+LPF DD       N+  +YR I       P +F S+AR ++ K+L P+P  R+ +S IM  ++ +
Sbjct:  694 ADIWSCGVILYAMLAGYLPFDDDPHNPNGENVPRLYRYICSTPLIFPEFFKSKARDILKKILVPDPAKRVRMSAIMNHAYLR 775          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK1_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Rattus norvegicus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPK 241
            DIWS GVILY LL G LPF DD++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  PK
Sbjct:  207 DIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPK 285          
The following BLAST results are available for this feature:
BLAST of FC925351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SNF1_YEAST1.552e-1342.68Carbon catabolite-derepressing protein kinase OS=S... [more]
HSL1_YEAST4.516e-1344.74Probable serine/threonine-protein kinase HSL1 OS=S... [more]
AAPK1_MOUSE5.898e-1344.305'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_PONAB1.006e-1242.315'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_PIG1.006e-1242.315'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_MOUSE1.006e-1242.315'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_HUMAN1.006e-1242.315'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_RAT1.314e-1242.315'-AMP-activated protein kinase catalytic subunit ... [more]
PPK1_SCHPO1.716e-1243.90Serine/threonine-protein kinase ppk1 OS=Schizosacc... [more]
AAPK1_RAT1.716e-1243.045'-AMP-activated protein kinase catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG18FM1 TF Citrus clementina cDNA clone KN0AAP3YG18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925351 ID=FC925351; Name=FC925351; organism=Citrus clementina; type=EST; length=645bp
GGCCGATATTTGGTCTTGTGGGGTCATTCTTTACGTGTTGTTAGCAGGTT
TCTTGCCATTCCAGGATGATAATATCGTGTCCATGTATCGGAAGATTTAC
AGGGGAGATTTCAAGTGCCCGCCTTGGTTTTCATCTGAAGCGAGGAGGTT
GATCACCAAGCTTCTCGATCCAAACCCTAACTCAAGAATCGCTATTTCAA
AGATCATGGAGTCTTCTTGGTTCAAAAAGTCTGCTCCCAAGGTTGTGATA
ACTAAGCAAGAGATGGAATTTGAAGCTGACAAGTCATCAAAGCAACCTGA
GACTCTAAATGCGTTTCATATCATCTCTTTGTCGGAAGGGTTTGATTTGT
CACCTTTGTTTGAGGAGAAAAAGAGAGCGGAAAGAGAGGAGCTGAGATTT
GCAACCACGAGGCCTGCAAGCAGTGTGATCTCAAGATTTGAAGAGGTGGC
CAAGGCCGTTAAGTTTAATGTCAAAACGAGCGAGTCAAGAGTCAGATTAC
AAGGCCAAGAAAGCGGAAGGAAAGGCAAATTGGCTATCAATGCTGACATC
TTTGCCGTTACACCGTCGCTTTTGGTGGTGGAAGTGAAGAAACATAATGG
TGATACATTGGAGTACAATCAATTCTGTAACAACGAGCTTCGGCC
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