FC925351

Overview
NameFC925351
Unique NameFC925351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14687 contig Ccv1_Contig14687:621..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK1_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragment) OS=Pongo abelii GN=PRKAA1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPK 241
            DIWS GVILY LL G LPF DD++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  PK
Sbjct:  202 DIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPK 280          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK1_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Homo sapiens GN=PRKAA1 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPK 241
            DIWS GVILY LL G LPF DD++ ++++KI  G F  P + +     L+  +L  +P  R  I  I E  WFK+  PK
Sbjct:  207 DIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPK 285          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: STK6_XENLA (Serine/threonine-protein kinase 6 OS=Xenopus laevis GN=aurka PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSA 235
            D+WS GV+ Y  L G  PF+ D     YR+I + +F+ PP+ S EAR L++KLL  NPN R+ +  ++E  W  K++
Sbjct:  318 DLWSLGVLCYEFLVGKPPFETDTHQETYRRISKVEFQYPPYVSEEARDLVSKLLKHNPNHRLPLKGVLEHPWIIKNS 394          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK2_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Caenorhabditis elegans GN=aak-2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVV---ITKQEMEFEADKSSKQPETLNAFHI 322
            D+WSCGVILY LL G LPF D+++ S++RKI  G F  P +       L+  +L  +P  R  I  ++   WF+K  P  +   I + E      ++ ++      +H+
Sbjct:  267 DVWSCGVILYALLCGTLPFDDEHVPSLFRKIKSGVFPTPDFLERPIVNLLHHMLCVDPMKRATIKDVIAHEWFQKDLPNYLFPPINESEASIVDIEAVREVTEFQRYHV 375          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AAPK1_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Caenorhabditis elegans GN=aak-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVVITKQEME 268
            D+WSCGVILY +L G LPF D N+ +++ KI  G +  P     +A  LI+ +L  +P  R  + +I+  SWF+   P  +  + E E
Sbjct:  204 DLWSCGVILYAMLCGTLPFDDQNVPTLFAKIKSGRYTVPYSMEKQAADLISTMLQVDPVKRADVKRIVNHSWFRIDLPYYLFPECENE 291          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: SIK3_DANRE (Serine/threonine-protein kinase SIK3 homolog OS=Danio rerio GN=zgc:66101 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 35/115 (30.43%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVVITKQEMEFEADKSSKQPETLNAFHIISLSE-GFD 346
            DIWS GV+LYVL+ G LPF    + ++  ++  G F+ P + S++   LI  +L   P+ R+++ +I ++ W ++  P     +  +E E  K  ++ E +N   +++++E GFD
Sbjct:  238 DIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTDCEYLIRHMLILEPSRRLSMEQICKNKWMRQGDPDPEFDRLIVECEQVKVERETELINEQVLMAMAEMGFD 352          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: AMPKA_DICDI (5'-AMP-activated serine/threonine-protein kinase catalytic subunit alpha OS=Dictyostelium discoideum GN=snfA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPK 241
            D+WSCGVILY  L   LPF D++I  +++KI  G F  P + S     LI K+L  +P  RI I +I    WF+   PK
Sbjct:  212 DVWSCGVILYAFLCAKLPFDDESIPMLFKKIREGVFSIPDFVSPSCADLIKKMLVVDPVKRITIHEIRNHPWFQVKLPK 290          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: STK6L_XENLA (Serine/threonine-protein kinase Eg2-like OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSA 235
            D+WS GV+ Y  L G  PF+ D     YR+I + +F+ PP+ S EA+ L++KLL  NPN R+ +  ++E  W  K++
Sbjct:  318 DLWSLGVLCYEFLVGKPPFETDTHQETYRRISKVEFQYPPYVSEEAKDLVSKLLKHNPNHRLPLKGVLEHPWIVKNS 394          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: MRKA_DICDI (Probable serine/threonine-protein kinase MARK-A OS=Dictyostelium discoideum GN=mrkA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 31/110 (28.18%), Postives = 66/110 (60.00%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVVITKQEMEFEADKSSKQPETLNAFHIISLS 334
            D+WS GV+L+VL+ G+LPF  DN V +++KI  G++  P + + E + LI+++L  +P+ R  + +I+   W   S  +++++    +   + +S   + +N  ++++ S
Sbjct:  289 DVWSMGVVLFVLVTGYLPFDGDNYVELFQKILAGNYTIPSYLTHECKSLISRMLVVDPDKRATMEEIINHPWL-SSTKQIILSTTMTDSLKNLNSCLEQQINVENLLNQS 397          
BLAST of FC925351 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    5 DIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNSRIAISKIMESSWFKKSAPKVVITKQEME 268
            D+WSCG++LYV+L G LPF D+ I ++++K+    +  P + S  A+ LI +++  +P  RI I +I    WF  + P  +   +E++
Sbjct:  213 DVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLPDYLRPMEEVQ 300          
The following BLAST results are available for this feature:
BLAST of FC925351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
AAPK1_PONAB1.716e-1243.045'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_HUMAN1.716e-1243.045'-AMP-activated protein kinase catalytic subunit ... [more]
STK6_XENLA3.823e-1241.56Serine/threonine-protein kinase 6 OS=Xenopus laevi... [more]
AAPK2_CAEEL3.823e-1232.115'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_CAEEL3.823e-1237.505'-AMP-activated protein kinase catalytic subunit ... [more]
SIK3_DANRE4.993e-1230.43Serine/threonine-protein kinase SIK3 homolog OS=Da... [more]
AMPKA_DICDI4.993e-1243.045'-AMP-activated serine/threonine-protein kinase c... [more]
STK6L_XENLA6.521e-1240.26Serine/threonine-protein kinase Eg2-like OS=Xenopu... [more]
MRKA_DICDI6.521e-1228.18Probable serine/threonine-protein kinase MARK-A OS... [more]
SNF1_SCHPO1.453e-1134.09SNF1-like protein kinase ssp2 OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG18FM1 TF Citrus clementina cDNA clone KN0AAP3YG18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925351 ID=FC925351; Name=FC925351; organism=Citrus clementina; type=EST; length=645bp
GGCCGATATTTGGTCTTGTGGGGTCATTCTTTACGTGTTGTTAGCAGGTT
TCTTGCCATTCCAGGATGATAATATCGTGTCCATGTATCGGAAGATTTAC
AGGGGAGATTTCAAGTGCCCGCCTTGGTTTTCATCTGAAGCGAGGAGGTT
GATCACCAAGCTTCTCGATCCAAACCCTAACTCAAGAATCGCTATTTCAA
AGATCATGGAGTCTTCTTGGTTCAAAAAGTCTGCTCCCAAGGTTGTGATA
ACTAAGCAAGAGATGGAATTTGAAGCTGACAAGTCATCAAAGCAACCTGA
GACTCTAAATGCGTTTCATATCATCTCTTTGTCGGAAGGGTTTGATTTGT
CACCTTTGTTTGAGGAGAAAAAGAGAGCGGAAAGAGAGGAGCTGAGATTT
GCAACCACGAGGCCTGCAAGCAGTGTGATCTCAAGATTTGAAGAGGTGGC
CAAGGCCGTTAAGTTTAATGTCAAAACGAGCGAGTCAAGAGTCAGATTAC
AAGGCCAAGAAAGCGGAAGGAAAGGCAAATTGGCTATCAATGCTGACATC
TTTGCCGTTACACCGTCGCTTTTGGTGGTGGAAGTGAAGAAACATAATGG
TGATACATTGGAGTACAATCAATTCTGTAACAACGAGCTTCGGCC
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