FC925354

Overview
NameFC925354
Unique NameFC925354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.518e-16
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELAN-ILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            VDFTA+WCGPC+ IAP    L+N     V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:   30 VDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.518e-16
Identity = 36/85 (42.35%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 259
            +L  VDF+A+WCGPC+ I PF   +    P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   21 KLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.901e-16
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGAKKEELQQTI 247
            +L  VDF+A+WCGPC+ I PF   L+    NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGAKKEELQQTIAKH 256
            +L  +DFTASWCGPC+ IAP   E+A   P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 34/87 (39.08%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            +++  +DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.995e-15
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 250
            +L  VDF A+WCGPC+ IAP + + +   P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.995e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 259
            +L  VDF A+WCGPC+ IAP   + +N   +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:   19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.995e-15
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            +L  VDF A WCGPC+ IAPF  E +     ++F+KVDVDE+  V     + +MPTF   K G  VD ++GA    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.524e-15
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELAN-ILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 259
            +L  +DF A+WCGPC+ I+P L EL+     NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   29 KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.521e-15
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    5 QLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 259
            +L  VDF A+WCGPC+ IAP + + A    +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
The following BLAST results are available for this feature:
BLAST of FC925354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
TRXH_CHLRE4.518e-1649.40Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_OPHHA4.518e-1642.35Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_PONAB5.901e-1648.78Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY1.315e-1549.41Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO1_CAEEL1.315e-1539.08Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST4.995e-1548.78Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRX1_SCHPO4.995e-1541.18Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PLAF74.995e-1544.19Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO2_DROME6.524e-1543.02Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TRX2_YEAST8.521e-1544.71Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG22FM1 TF Citrus clementina cDNA clone KN0AAP3YG22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925354 ID=FC925354; Name=FC925354; organism=Citrus clementina; type=EST; length=308bp
CAAACAGCTGCCTTTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAATATACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCC
AAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCT
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