FC925354

Overview
NameFC925354
Unique NameFC925354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 262
            +DF A+WCGPCR I+P   + +      N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+  + K LA
Sbjct:   23 IDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 2
Query:    8 LPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 256
            L  VDF A WCGPCR + P L  LA  LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            VDF A WCGPCR +AP + E+A      +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   25 VDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.106e-13
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            VDF A WCGPCR +AP + E+A      +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   25 VDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 29/78 (37.18%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-AKKEELQQTI 247
            VDF A+WCGPC+ + P   E+A    +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL++ +
Sbjct:   22 VDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELL 99          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 2
Query:    2 KQLPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            ++L  VDF A WCGPCR I P L E+A    N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA  K  L  TI K+L
Sbjct:   17 EKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 247
            +D    WCGPC+ +AP   ELA  L +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  108 LDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 2
Query:    8 LPFVDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 256
            L  +DF A WCGPC+ + P L  L   + +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   20 DFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 247
            DF A+WCGPC+ +AP L  +A     V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   28 DFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 256
            VDF A WCGPC+++ PFL +L+       F+ V+ D+   +A    V A+PT +  ++G+ +D++VGA  + L   +AK+
Sbjct:   40 VDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
The following BLAST results are available for this feature:
BLAST of FC925354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
THIO_COPCM6.106e-1339.29Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_CHLPN6.106e-1345.24Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO1_ANASP6.106e-1345.78Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO6.106e-1345.78Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_MYCGA2.320e-1237.18Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CYAME2.320e-1243.68Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
TRXF_MESCR3.958e-1246.15Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CHLCV5.169e-1240.48Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO_ECHGR6.751e-1243.42Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRX2_SCHPO1.152e-1136.25Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG22FM1 TF Citrus clementina cDNA clone KN0AAP3YG22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925354 ID=FC925354; Name=FC925354; organism=Citrus clementina; type=EST; length=308bp
CAAACAGCTGCCTTTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAATATACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCC
AAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCT
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