FC925354

Overview
NameFC925354
Unique NameFC925354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 66.6254 bits (161), Expect = 4.376e-11
Identity = 31/83 (37.35%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELANILPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            VDF ASWCGPC  + P + +LA+      +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:   25 VDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.715e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            VDF A WCGPCR IAP + ELA      +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   90 VDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 262
            VDF A WCGPCR ++P + E+A     ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   24 VDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA-NILPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 262
            VDF A WCGPC+ IAP + ELA      +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   97 VDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    5 QLP-FVDFTASWCGPCRFIAPFLAELANILP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 259
            +LP  VDF A WCGPCR +AP + E++      V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   20 ELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of FC925354 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   17 VDFTASWCGPCRFIAPFLAELA--NILPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 268
            VDF A WC PC+ IAP   +L+  + +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:   23 VDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
The following BLAST results are available for this feature:
BLAST of FC925354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
THIO_CHLLT4.376e-1137.35Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
TRXM_PEA5.715e-1139.76Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_PORYE7.465e-1135.71Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
TRXM_SPIOL9.749e-1138.10Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_SYNY39.749e-1140.91Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_FUSCU9.749e-1140.40Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YG22FM1 TF Citrus clementina cDNA clone KN0AAP3YG22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925354 ID=FC925354; Name=FC925354; organism=Citrus clementina; type=EST; length=308bp
CAAACAGCTGCCTTTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAATATACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCC
AAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCT
back to top