FC925355

Overview
NameFC925355
Unique NameFC925355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15293 contig Ccv1_Contig15293:162..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925355 vs. ExPASy Swiss-Prot
Match: ANK1_MOUSE (Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 55/184 (29.89%), Postives = 92/184 (50.00%), Query Frame = 1
Query:    1 RQLPLLGQMQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 552
            R   +L Q   N D  S++     +H  A   +L   Q LL    S+     P    TPLH+++      +V+ LL+       ++E +     TPLH AA+NG    +++LL HGA I+AK  NG++P+H++     + +    V+ LL+YNA+      +  TPL H++   G  ++ ++LL
Sbjct:  183 RTAAVLLQNDPNPDVLSKTGF-TPLHIAAHYENLNVAQLLLNRGASV--NFTPQNGITPLHIASRRGNVIMVRLLLD----RGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAA----QGDHLDCVRLLLQYNAEIDDITLDHLTPL-HVAAHCGHHRVAKVLL 354          

HSP 2 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 55/164 (33.54%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   73 IHGCAQSGDLLAFQRLLRE--NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 558
            +H  +  G L   + LL+   +P++ N    V  +TPLH++A     E+ K LL+    +K +  A+    +TPLH AA+ G     KLLL +GA        G TPLH +     R     T   LLE  A  +    +G TPL H++   G  +L ELLL H
Sbjct:  404 LHVASFMGHLPIVKNLLQRGASPNVSN----VKVETPLHMAARAGHTEVAKYLLQ----NKAKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAA----REGHVDTALALLEKEASQACMTKKGFTPL-HVAAKYGKVRLAELLLEH 554          

HSP 3 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  172 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 552
            TPLHV+A Y K  + + LLE   +      A    G TPLH+A  +   +  KLLL  G    + A NG TPLH++     +       ++LL+Y    +A+  +G TPL HL+   G  ++  LLL
Sbjct:  534 TPLHVAAKYGKVRLAELLLEHDAHPN----AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA----KQNQIEVARSLLQYGGSANAESVQGVTPL-HLAAQEGHTEMVALLL 651          
BLAST of FC925355 vs. ExPASy Swiss-Prot
Match: V162_FOWPV (Putative ankyrin repeat protein FPV162 OS=Fowlpox virus GN=FPV162 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  172 TPLHVSA-GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL--LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR---ELLLWHSEE 567
            TPLH +A  Y  +  ++ L+E+      E+ A N  G+TPLH AA++  N   KL  L+AHG+ + A     +TPLHL+ +    +E    +K L+E+ A+ ++ D  G+TP+ ++S    S  L+   ELL+ H  +
Sbjct:  230 TPLHDAATSYELSNTIEMLIEYGA----EVNAANSVGDTPLHCAARSR-NPVHKLKTLIAHGSNVNAVNGISVTPLHLATYSDNATE---ALKVLIEHGAEVNSVDIYGRTPMHYISRSYSSQSLKTAVELLVEHGAD 359          
BLAST of FC925355 vs. ExPASy Swiss-Prot
Match: TRPA1_RAT (Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 51/166 (30.72%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   73 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK-DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 567
            +H   + G  ++   LLR N S+ ++      ++PLH +A Y +    + LL+   + ++ L   +++G TPLH+AAKNG ++  +LLL  GA      +NG T LH    ++       T+K +L+ N  C+ + D EG T L H +   G AK   +LL ++ +
Sbjct:  418 LHYACRQGAPVSVNNLLRFNVSVHSKSKD--KKSPLHFAASYGRINTCQRLLQDISDTRL-LNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALF-LSDHNGWTALH----HASMGGYTQTMKVILDTNLKCTDRLDEEGNTAL-HFAAREGHAKAVAMLLSYNAD 574          
The following BLAST results are available for this feature:
BLAST of FC925355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ANK1_MOUSE5.851e-1129.89Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2[more]
V162_FOWPV7.642e-1134.06Putative ankyrin repeat protein FPV162 OS=Fowlpox ... [more]
TRPA1_RAT7.642e-1130.72Transient receptor potential cation channel subfam... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG23FM1 TF Citrus clementina cDNA clone KN0AAP3YG23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925355 ID=FC925355; Name=FC925355; organism=Citrus clementina; type=EST; length=776bp
CGCCAATTACCTCTGCTGGGGCAGATGCAGAAGAATCAAGATCGACGGTC
AAGATCTGCCAAGCCCGCCACCATTCATGGCTGCGCCCAGTCTGGGGATC
TTCTCGCCTTCCAGAGGCTACTTCGAGAGAACCCATCTCTTCTCAATGAA
AGAAATCCCGTTATGGCACAAACACCCCTTCATGTTTCCGCTGGTTATAA
CAAGGCTGAAATAGTTAAATCTCTGCTTGAATGGCCAGGAAACGATAAGG
TTGAGTTGGAGGCCCAAAACATGTATGGAGAAACTCCATTGCACATGGCA
GCGAAGAATGGATGTAATGAAGCTGCAAAGTTACTTCTTGCTCATGGTGC
TTTTATTGAAGCCAAAGCTAATAATGGGATGACACCATTACACCTTTCCG
TCTGGTACTCTATTCGGTCTGAAGACTACGCAACTGTTAAGACATTGCTT
GAGTATAATGCTGACTGCAGTGCTAAGGACAATGAGGGCAAGACTCCTCT
AGATCATCTCTCAAATGGCCCAGGCAGTGCGAAGTTGCGTGAACTATTAC
TCTGGCACAGTGAAGAGCAGCGGAAGAGAAGAGCACTTGAAGCGTGCAGC
GAAACAAAAGCCAAGATGGATGAACTTGAAAATGAACTATCAAACATTGT
GGGATTGCATGAGCTCAAGATACAACTTCGAAAATGGGCAAAAGGGATGC
TTCTGGATGAGAGGCGCAAAGCCCTTGGTTTGAAAGTTGGTGCTAGAAGA
CCTCCCCATATGGCATTCCTTGGAAA
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