FC925357

Overview
NameFC925357
Unique NameFC925357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:19..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKC 712
            YRGVRRRPWGK+AAEIRDP + G RVWLGT++T            FQLRGSKA LNFP   G C
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSC 155          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  518 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG-------KCDSNAAVARECDSSAEAGACETKRK 784
            HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA LNFP   G       +  +    + E  SS+E  + + +RK
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRK 199          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.074e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  518 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG 706
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA+LNFP   G
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.074e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  518 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG 706
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA+LNFP   G
Sbjct:  102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.074e-15
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  518 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG-----------KCDSNAAVARECDSSAEAGACETKRK 784
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT+++            F++RG+KA+LNFP   G           K   + + +    S++E+G+ + +RK
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRK 205          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 700
            YRGVRRRPWGKYAAEIRD  R G RVWLGTF+T            F++RG+KA+LNFP E
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 700
            YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT            F L+GS A+LNFP +
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPAD 141          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDS-NAAVARECDSSAEAGACETKRK 784
            YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT            + +RG  AILNFP E       +++ A    SSA A A  + R+
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQ 103          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAE 757
            YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT            + +RG  AILNFP E      +++ A    SS++
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGTGSSSTAANSSSSSQ 98          
BLAST of FC925357 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  521 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 700
            YRGVRRRPWGK+AAEIRD TR G+RVWLGTF++            F +RGS AILNF  E
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
The following BLAST results are available for this feature:
BLAST of FC925357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF99_ARATH2.826e-1662.50Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC8.221e-1644.79Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_TOBAC1.074e-1557.14Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.074e-1557.14Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_SOLLC1.074e-1541.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
PTI5_SOLLC1.402e-1563.33Pathogenesis-related genes transcriptional activat... [more]
ERF94_ARATH1.831e-1561.67Ethylene-responsive transcription factor ERF094 OS... [more]
ERF96_ARATH2.392e-1549.44Ethylene-responsive transcription factor ERF096 OS... [more]
ERF97_ARATH3.124e-1550.63Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF92_ARATH1.187e-1461.67Ethylene-responsive transcription factor 1B OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YI01FM1 TF Citrus clementina cDNA clone KN0AAP8YI01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925357 ID=FC925357; Name=FC925357; organism=Citrus clementina; type=EST; length=795bp
CTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGACACAGCTTGCT
TAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCGAGTTTATCGAG
CAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTTAGTTCGAGTTT
GTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTCTGCATCTTCAG
ATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATGAATCCAAACCT
CAAATCATTGATCTTGTTACACCGCAACCCACTAATACTTGCTCTGAATT
GACTAACGATTTCTTTGAATTTGACATTAGACCTCAAATCCAATCGCAAC
CGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAATATCTCCAAAT
TCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATCTCAGTGCCTAA
GAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAAGGCCAAACCTG
AGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGAGGCCGTGGGGA
AAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGCGTACGTGTCTG
GCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGCGTACGACCGTG
CCGCTTTCCAGCTGCGCGGCTCGAAAGCGATCCTCAACTTTCCTCTTGAA
GCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAGAGAGTGTGACTCGAG
CGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGAGGGACTGTGA
back to top