FC925360

Overview
NameFC925360
Unique NameFC925360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length242
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.119e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 2
Query:   20 KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPA 196
            K P  +FLKVDVDELK +A  +++EAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   68 KFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.780e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   20 KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH-PATA 202
            K P+V F KVDVD+LK VA ++ +EAMP+F+ LKEG+ V+++VGA+K+EL   IA H P TA
Sbjct:   55 KFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHAPITA 116          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.571e-11
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:   29 NVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATASA 208
            +V+F KVDVDEL +VA ++ ++AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:   58 DVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
The following BLAST results are available for this feature:
BLAST of FC925360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TRXH_WHEAT6.119e-1357.63Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_FAGES1.780e-1256.45Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH2.571e-1151.67Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YI03FM1 TF Citrus clementina cDNA clone KN0AAP8YI03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925360 ID=FC925360; Name=FC925360; organism=Citrus clementina; type=EST; length=242bp
CTTGGCAGAGCCCCCTTAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTG
ATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCATTGGAGGCCATG
CCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGG
AGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCCGGCAACTG
CTTCTGCCTAATAAGTTACAACTATCCTCCTGCCTTTTGTCT
back to top