FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQE 202
            E +V +++D+   GRT +VIAHRLST+++AD + V+ +G+IVE+G+HEELL +  G YT+LV  Q  E
Sbjct:  533 ERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQME 600          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: PMD1_SCHPO (Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E LV  A+D+  + RT +VIAHRLST+++AD + VV+ G+IVE G+H ELL   G Y  LV+ Q
Sbjct:  603 EVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARLVEAQ 666          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_THICR (Lipid A export ATP-binding/permease protein msbA OS=Thiomicrospira crunogena (strain XCL-2) GN=msbA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 190
            E L+ +AM+SL K RTV++IAHRLST+++AD + V+ +G + E GTH EL++   +Y+ L K+
Sbjct:  512 EKLIQEAMNSLRKNRTVIIIAHRLSTIENADKIVVLEEGSLKEQGTHAELMALNSIYSQLYKQ 574          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 29/62 (46.77%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 187
            E +V +A+D   +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V+
Sbjct: 1209 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVQ 1270          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217
            E +V  A+D   +GRT +VIAHRLSTV++AD +A    G IVE G HEEL+ + G+Y  LV  Q +  + E+
Sbjct:  565 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYCRLVMMQTRGNEVEL 636          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 29/62 (46.77%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 187
            E +V +A+D   +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V+
Sbjct: 1210 EKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQKGIYFSMVQ 1271          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 29/62 (46.77%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 187
            E +V +A+D   +GRT +VIAHRLST+Q+AD + V+ +G++ E GTH++LL++ G+Y ++V+
Sbjct: 1209 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQKGIYFSMVQ 1270          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR1_HUMAN (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217
            E +V  A+D   KGRT +VIAHRLSTV++AD +A   DG IVE G H+EL+ + G+Y  LV  Q    + E+
Sbjct:  566 EAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVEL 637          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E +V +A+D   +GRT +VIAHRLST+Q+AD + V  +G + E GTH++LL++ G+Y ++V  Q
Sbjct: 1211 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVKRQL 196
            E +V DA+D +M  RT +V+AHRLST+++AD +AVV +G IVE G HE L++ K GVY +LV+  L
Sbjct: 1223 ERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHL 1288          

HSP 2 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL-SKGGVYTALVKRQLQEPKTE 214
            E +V +A+D +M  RT +V+AHRLSTV++AD +AV+  G+IVE G+H ELL    G Y+ L++ Q    +TE
Sbjct:  577 ERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTE 648          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB20B_ARATH (ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 30/62 (48.39%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 187
            E +V +A+D LM GR+ ++IA RLS +++AD +AV+ +G++VE GTH+EL++ GG+Y  L+K
Sbjct:  587 ERIVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELINLGGLYAELLK 648          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: TAGA_DICDI (Serine protease/ABC transporter B family protein tagA OS=Dictyostelium discoideum GN=tagA PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217
            E LV D++D L+ GRTV+++AHRL+T+ +AD +AVVSD  I E GT EELL+K G++   V+ Q  +   E+
Sbjct: 1548 EKLVQDSIDKLVVGRTVIIVAHRLTTILTADIIAVVSDSTISEMGTPEELLAKKGMFYDFVQIQYGKQGEEL 1619          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
AB17B_ARATH2.067e-1150.00ABC transporter B family member 17 OS=Arabidopsis ... [more]
PMD1_SCHPO2.700e-1151.56Leptomycin B resistance protein pmd1 OS=Schizosacc... [more]
MSBA_THICR2.700e-1147.62Lipid A export ATP-binding/permease protein msbA O... [more]
MDR2_CRIGR2.700e-1146.77Multidrug resistance protein 2 OS=Cricetulus grise... [more]
MDR1_RAT2.700e-1146.77Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
MDR1_MOUSE2.700e-1146.77Multidrug resistance protein 1 OS=Mus musculus GN=... [more]
MDR1_HUMAN2.700e-1148.61Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
AB21B_ARATH2.700e-1153.03ABC transporter B family member 21 OS=Arabidopsis ... [more]
AB20B_ARATH2.700e-1148.39ABC transporter B family member 20 OS=Arabidopsis ... [more]
TAGA_DICDI3.526e-1148.61Serine protease/ABC transporter B family protein t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
back to top