FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3798 contig Ccv1_Contig3798:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR1_CAEEL (Multidrug resistance protein 1 OS=Caenorhabditis elegans GN=pgp-1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPK 208
            E +V +A+D   +GRT +VIAHRL+TV +AD +AVVS+G I+E GTH +L+S+ G Y  L ++Q+ E K
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  V  ++D LM+GRT LVIAHRLSTVQ+AD + V+  G IVE G H ELL+ GG+Y  L   Q +E
Sbjct:  524 ERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLAAGGLYATLYNMQFRE 590          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB1B_ARATH (ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193
            E LV +A+D  M GRT L+IAHRLST++ AD VAV+  G + E GTH+EL SKG  GVY  L+K Q
Sbjct:  542 EKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQ 607          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH ELL++GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQFRE 586          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANOM (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msbA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH ELL++GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQFRE 586          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANCP (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris GN=msbA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH+ELL+ GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQFRE 586          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANC8 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msbA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH+ELL+ GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQFRE 586          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_HAEDU (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus ducreyi GN=msbA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  +  A+ +L K +TVLVIAHRLST++ AD + VV  G+IVE G+HE+LL+KGG Y  L   Q  E
Sbjct:  516 ELAIQSALAALQKNKTVLVIAHRLSTIEKADEILVVDQGKIVERGSHEQLLAKGGAYKQLYSMQFSE 582          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217
            E +V  A+D++M+ RT +VIAHRLST+++ D + V+ DG++ E+G+H EL+S+GG Y  LV  Q  EP+  +
Sbjct:  546 EKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENL 617          

HSP 2 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQ 193
            E  V +A+D LMKGRT +++AHRLST++ ADT+ V+  G++VE G+H EL+SK  G Y  L   Q
Sbjct: 1180 EKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANC5 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH +LL++GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQGGLYSHLHGMQFRE 586          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MDR1_CAEEL6.427e-1350.72Multidrug resistance protein 1 OS=Caenorhabditis e... [more]
MSBA_BORA18.393e-1355.22Lipid A export ATP-binding/permease protein msbA O... [more]
AB1B_ARATH8.393e-1357.58ABC transporter B family member 1 OS=Arabidopsis t... [more]
MSBA_XANOR1.096e-1256.72Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANOM1.096e-1256.72Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANCP1.432e-1256.72Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANC81.432e-1256.72Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAEDU1.432e-1252.24Lipid A export ATP-binding/permease protein msbA O... [more]
AB14B_ARATH1.432e-1245.83ABC transporter B family member 14 OS=Arabidopsis ... [more]
MSBA_XANC52.442e-1255.22Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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