FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MDR1_CAEEL (Multidrug resistance protein 1 OS=Caenorhabditis elegans GN=pgp-1 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13 Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPK 208 E +V +A+D +GRT +VIAHRL+TV +AD +AVVS+G I+E GTH +L+S+ G Y L ++Q+ E K Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13 Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E V ++D LM+GRT LVIAHRLSTVQ+AD + V+ G IVE G H ELL+ GG+Y L Q +E Sbjct: 524 ERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLAAGGLYATLYNMQFRE 590
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB1B_ARATH (ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13 Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193 E LV +A+D M GRT L+IAHRLST++ AD VAV+ G + E GTH+EL SKG GVY L+K Q Sbjct: 542 EKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQ 607
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E LV DA+ LM RT LVIAHRLST++ AD V V+ G IVE GTH ELL++GG+Y+ L Q +E Sbjct: 520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQFRE 586
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANOM (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msbA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E LV DA+ LM RT LVIAHRLST++ AD V V+ G IVE GTH ELL++GG+Y+ L Q +E Sbjct: 520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQFRE 586
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANCP (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris GN=msbA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E LV DA+ LM RT LVIAHRLST++ AD V V+ G IVE GTH+ELL+ GG+Y+ L Q +E Sbjct: 520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQFRE 586
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANC8 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msbA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E LV DA+ LM RT LVIAHRLST++ AD V V+ G IVE GTH+ELL+ GG+Y+ L Q +E Sbjct: 520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQFRE 586
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_HAEDU (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus ducreyi GN=msbA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E + A+ +L K +TVLVIAHRLST++ AD + VV G+IVE G+HE+LL+KGG Y L Q E Sbjct: 516 ELAIQSALAALQKNKTVLVIAHRLSTIEKADEILVVDQGKIVERGSHEQLLAKGGAYKQLYSMQFSE 582
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12 Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217 E +V A+D++M+ RT +VIAHRLST+++ D + V+ DG++ E+G+H EL+S+GG Y LV Q EP+ + Sbjct: 546 EKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENL 617 HSP 2 Score: 68.5514 bits (166), Expect = 4.606e-11 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQ 193 E V +A+D LMKGRT +++AHRLST++ ADT+ V+ G++VE G+H EL+SK G Y L Q Sbjct: 1180 EKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANC5 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msbA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12 Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E LV DA+ LM RT LVIAHRLST++ AD V V+ G IVE GTH +LL++GG+Y+ L Q +E Sbjct: 520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQGGLYSHLHGMQFRE 586 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |