FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XANAC (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas axonopodis pv. citri GN=msbA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G IVE GTH +LL++GG+Y+ L   Q +E
Sbjct:  520 ERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQGGLYSHLHGMQFRE 586          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPK 208
            E  V +A++ LMKGRT LVIAHRLST+++AD + V+  GEIVE G HE LL++ G Y  L + Q +E K
Sbjct:  523 EMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLARRGEYYKLHQLQFKEDK 591          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFT (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKT 211
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G I+ESGTH +LL++ G+Y  L   Q +E  T
Sbjct:  520 ERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLARDGLYAYLYSMQFRERPT 589          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFA (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKT 211
            E LV DA+  LM  RT LVIAHRLST++ AD V V+  G I+ESGTH +LL++ G+Y  L   Q +E  T
Sbjct:  520 ERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLARDGLYAYLYSMQFRERPT 589          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SALTY (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhimurium GN=msbA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH ELL++ GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SALTI (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhi GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH ELL++ GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SALCH (Lipid A export ATP-binding/permease protein msbA OS=Salmonella choleraesuis GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH ELL++ GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSEU2 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205
            A+D +MKGRT LVIAHRLST++ AD + V+  G+IVE GTH ELL++ G Y  L    L EP
Sbjct:  533 ALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVERGTHTELLAQNGYYARLHAMGLDEP 594          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSE14 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205
            A+D +MKGRT LVIAHRLST++ AD + V+  G+IVE GTH ELL++ G Y  L    L EP
Sbjct:  533 ALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGQIVERGTHTELLAQNGYYARLHAMGLDEP 594          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRATT (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199
            E +V  A++SL K  T +VIAHRLSTV++AD + V+  G +VESG H+ELL +GG+YT L +  LQ
Sbjct:  544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQGGLYTRLYQSGLQ 609          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MSBA_XANAC2.442e-1255.22Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SYNAS2.442e-1253.62Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XYLFT3.189e-1252.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XYLFA3.189e-1252.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALTY3.189e-1257.81Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALTI3.189e-1257.81Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALCH3.189e-1257.81Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEU23.189e-1256.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSE143.189e-1256.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRATT3.189e-1253.03Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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