FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3798 contig Ccv1_Contig3798:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRAT1 (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199
            E +V  A++SL K  T +VIAHRLSTV++AD + V+  G +VESG H+ELL +GG+YT L +  LQ
Sbjct:  544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQGGLYTRLYQSGLQ 609          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_CHRVO (Lipid A export ATP-binding/permease protein msbA OS=Chromobacterium violaceum GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 214
            E LV  A+++LMK RT +VIAHRLST+++AD + V+  G + E G H+ LL +GG+Y  L   Q  EP+ +
Sbjct:  514 ERLVQAALENLMKNRTTIVIAHRLSTIENADRIVVMHQGRLAEQGRHQALLEQGGLYARLHSLQFSEPQAD 584          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  +  A++ + +GRT  VIAHRLST++ AD + V+  GEI+ESGTH ELL++ G Y AL + Q QE
Sbjct:  511 ERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIESGTHGELLAQDGAYAALHQLQFQE 577          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSESM (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. tomato GN=msbA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205
            A+D +MKGRT LVIAHRLST++ AD + V+  G+IVE GTH ELL++ G Y  L    L EP
Sbjct:  533 ALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVERGTHTELLAQNGYYARLHAMGLDEP 594          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTEI 217
            A+D +MKGRT LVIAHRLST++ AD + V+  G IVE GTH++LL++ G Y  L    L  P  +I
Sbjct:  534 ALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHDDLLAQNGYYARLNAMGLDAPAEDI 599          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            A+++LMKGRT LVIAHRLST++ AD + V+  G IVESG+H ELL++ G+Y  L + Q Q+
Sbjct:  534 ALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGSHRELLAQDGLYAHLHRIQFQQ 594          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB3B_ARATH (ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187
            E +V DA+D +M  RT +V+AHRLST+++AD +AVV +G IVE GTHE L++ +GGVY +LV+
Sbjct: 1160 ERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVYASLVQ 1222          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193
            E +V DA+  LM GRT +VIAHRLST+Q+ DT+ V+  G++VE GTH  LL+KG  GVY +LV  Q
Sbjct: 1193 ERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1258          

HSP 2 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQE 202
            E +V +A+D+   GRT +VIAHRLST+++ D + V  +G+IVE+G+HEEL+    G YT+LV+ Q+ E
Sbjct:  553 ERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIME 620          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  V  A+++LM+GRT LVIAHRLST+++AD + V+  G+IVE+GTH ELL + G+Y  L + Q
Sbjct:  525 ERQVQAALEALMQGRTTLVIAHRLSTIENADRIVVLEHGQIVEAGTHRELLDRDGLYAGLHRIQ 588          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRATO (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=msbA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199
            E +V  A++SL K  T +VIAHRLSTV++AD + V+  G +VESG H+ELL +GG+YT L +  LQ
Sbjct:  544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQGGLYTRLYQSGLQ 609          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MSBA_FRAT13.189e-1253.03Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_CHRVO3.189e-1246.48Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_CHRSD3.189e-1250.75Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSESM4.166e-1256.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEPF4.166e-1251.52Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURXL4.166e-1255.74Lipid A export ATP-binding/permease protein msbA O... [more]
AB3B_ARATH4.166e-1255.56ABC transporter B family member 3 OS=Arabidopsis t... [more]
AB22B_ARATH4.166e-1256.06ABC transporter B family member 22 OS=Arabidopsis ... [more]
MSBA_RALSO5.440e-1253.13Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRATO5.440e-1253.03Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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