FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRATH (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=msbA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199 E +V A++SL K T +VIAHRLSTV++AD + V+ G +VESG H+ELL +GG+YT L + LQ Sbjct: 544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQGGLYTRLYQSGLQ 609
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E+ + A++ +M+GRT LVIAHRLST++ AD + V+ G+++E G+H++LL K G+YT + + E Sbjct: 515 EHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKNGLYTQMYRMNFSE 581
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 2 Query: 8 LVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 LV +A+D LMKGRT +VIAH LST+++AD + + G VE GTH+EL++K G+Y LV++Q Sbjct: 690 LVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELMAKQGLYFDLVEKQ 751 HSP 2 Score: 68.9366 bits (167), Expect = 3.526e-11 Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 8 LVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 LV +A++++MKGRT +VIAH L T+Q+AD +A V G+I+E GTH+ELL G Y+ L Q Q+ Sbjct: 1368 LVQEALENVMKGRTTIVIAHNLLTIQNADCIAYVRAGQIIERGTHDELLEAEGPYSQLWYNQQQK 1432
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12 Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193 E +V DA++ +M GRT +VIAHRLST+Q+ D +AV+ G++VE GTH LLSKG G+Y +LV Q Sbjct: 1171 ERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: YKNV_BACSU (Uncharacterized ABC transporter ATP-binding protein yknV OS=Bacillus subtilis GN=yknV PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+ +L+KGRT ++IAHRLST++ AD + V+ G +E G H++LL+KGG+Y LVK Q Sbjct: 535 EVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKGGIYAGLVKAQ 598
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E + A+D L K +TVLVIAHRLST++ AD + V+ DG +VE G+H EL+ K G Y L + Q E Sbjct: 516 ERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIEKDGAYAQLHRIQFGE 582
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SALPA (Lipid A export ATP-binding/permease protein msbA OS=Salmonella paratyphi A GN=msbA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT L+IAHRLST++ AD + VV DG IVE GTH ELL++ GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLMIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 2 Query: 20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205 A+D +MKGRT LVIAHRLST++ AD + V+ G IVE G+H +LL++ G Y+ L L+EP Sbjct: 534 ALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAQLLAQNGYYSRLHAMGLEEP 595
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E+ + A D M+ RT +VIAHRLST+++AD + V+ G+I+E GTH+ELL K G Y L +R +E Sbjct: 508 EHFIQKAFDEAMQNRTTIVIAHRLSTIENADRIVVMDKGQIIEQGTHQELLLKQGAYFQLHQRNFEE 574
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQEPK 208 E +V +A+D+ GRT +VIAHRLST+++AD + VV +G I+E+G+HEELL K G YT+LV+ Q + K Sbjct: 521 ERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNK 590 HSP 2 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193 E +V DA++ LM GRT +VIAHRLST+Q DT+AV+ +G +VE G H LL+KG G Y +LV Q Sbjct: 1156 ESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |