FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRATH (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=msbA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199
            E +V  A++SL K  T +VIAHRLSTV++AD + V+  G +VESG H+ELL +GG+YT L +  LQ
Sbjct:  544 ERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQGGLYTRLYQSGLQ 609          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E+ +  A++ +M+GRT LVIAHRLST++ AD + V+  G+++E G+H++LL K G+YT + +    E
Sbjct:  515 EHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKNGLYTQMYRMNFSE 581          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    8 LVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            LV +A+D LMKGRT +VIAH LST+++AD +  +  G  VE GTH+EL++K G+Y  LV++Q
Sbjct:  690 LVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELMAKQGLYFDLVEKQ 751          

HSP 2 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    8 LVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            LV +A++++MKGRT +VIAH L T+Q+AD +A V  G+I+E GTH+ELL   G Y+ L   Q Q+
Sbjct: 1368 LVQEALENVMKGRTTIVIAHNLLTIQNADCIAYVRAGQIIERGTHDELLEAEGPYSQLWYNQQQK 1432          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193
            E +V DA++ +M GRT +VIAHRLST+Q+ D +AV+  G++VE GTH  LLSKG  G+Y +LV  Q
Sbjct: 1171 ERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: YKNV_BACSU (Uncharacterized ABC transporter ATP-binding protein yknV OS=Bacillus subtilis GN=yknV PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+ +L+KGRT ++IAHRLST++ AD + V+  G  +E G H++LL+KGG+Y  LVK Q
Sbjct:  535 EVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKGGIYAGLVKAQ 598          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  +  A+D L K +TVLVIAHRLST++ AD + V+ DG +VE G+H EL+ K G Y  L + Q  E
Sbjct:  516 ERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIEKDGAYAQLHRIQFGE 582          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SALPA (Lipid A export ATP-binding/permease protein msbA OS=Salmonella paratyphi A GN=msbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT L+IAHRLST++ AD + VV DG IVE GTH ELL++ GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLMIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205
            A+D +MKGRT LVIAHRLST++ AD + V+  G IVE G+H +LL++ G Y+ L    L+EP
Sbjct:  534 ALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAQLLAQNGYYSRLHAMGLEEP 595          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E+ +  A D  M+ RT +VIAHRLST+++AD + V+  G+I+E GTH+ELL K G Y  L +R  +E
Sbjct:  508 EHFIQKAFDEAMQNRTTIVIAHRLSTIENADRIVVMDKGQIIEQGTHQELLLKQGAYFQLHQRNFEE 574          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQEPK 208
            E +V +A+D+   GRT +VIAHRLST+++AD + VV +G I+E+G+HEELL K  G YT+LV+ Q  + K
Sbjct:  521 ERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNK 590          

HSP 2 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193
            E +V DA++ LM GRT +VIAHRLST+Q  DT+AV+ +G +VE G H  LL+KG  G Y +LV  Q
Sbjct: 1156 ESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MSBA_FRATH5.440e-1253.03Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS5.440e-1243.28Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB3_DICDI5.440e-1253.23ABC transporter B family member 3 OS=Dictyostelium... [more]
AB15B_ARATH5.440e-1254.55ABC transporter B family member 15 OS=Arabidopsis ... [more]
YKNV_BACSU7.105e-1248.44Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_VIBVU7.105e-1249.25Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALPA7.105e-1256.25Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEF57.105e-1253.23Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ACIAD7.105e-1247.76Lipid A export ATP-binding/permease protein msbA O... [more]
AB18B_ARATH7.105e-1251.43ABC transporter B family member 18 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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