FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193
            E +V DA++ +M G+T +VIAHRLST+Q+ DT+AV+  G++VESGTH  LL+KG  G Y +LV  Q
Sbjct: 1157 ERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 214
            E +V +A+D+   GRT +VIAHRLST+++AD + V+ +G IVE+G+H++L+   G YT+LV+  LQ+ K E
Sbjct:  520 ERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGSHDKLMEIDGKYTSLVR--LQQMKNE 588          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 34/65 (52.31%), Postives = 52/65 (80.00%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 193
            E +V +A+D +M GRT +V+AHRLSTV++AD +AVV  G+I+ESG+H+EL+S   G Y++L++ Q
Sbjct:  535 EKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQ 599          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  +  A+D L K +TVLVIAHRLST++ AD + V+ DG +VE G+H EL+ K G Y  L + Q  E
Sbjct:  516 ERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIEKDGAYAQLHRIQFGE 582          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205
            E  + +A++ LM+GRT LVIAHRLST++ AD + V+  G +VE+GTH ELL   G Y +L + Q   P
Sbjct:  521 EKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVLDAGRVVETGTHRELLDHNGHYASLHRVQFNGP 588          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB5B_ARATH (ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187
            E +V DA+D +M  RT +V+AHRLST+++AD +AVV +G I E GTHE L++ +GGVY +LV+
Sbjct: 1161 ERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLINIEGGVYASLVQ 1223          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPK 208
            E +V  A+D++M+ RT +V+AHRLST+++ D + V+ DG++ E+G+H EL+ +GG Y  LV  Q  EP+
Sbjct:  545 EKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQ 613          

HSP 2 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVKRQ 193
            E LV +A+D LMKGRT +++AHRLST++ ADTVAV+  G +VE G+H EL+S   G Y  L   Q
Sbjct: 1178 EKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQ 1242          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D+L K RT LVIAHRLST++ AD + VV +G IVE G HEEL+S+ GVY  L + Q
Sbjct:  516 ERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELMSRQGVYAQLHQLQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL   GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL   GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL   GVY  L K Q
Sbjct:  516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
AB16B_ARATH7.105e-1254.55ABC transporter B family member 16 OS=Arabidopsis ... [more]
AB10B_ARATH7.105e-1252.31ABC transporter B family member 10 OS=Arabidopsis ... [more]
MSBA_VIBVY9.280e-1249.25Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALHEH9.280e-1248.53Lipid A export ATP-binding/permease protein msbA O... [more]
AB5B_ARATH9.280e-1253.97ABC transporter B family member 5 OS=Arabidopsis t... [more]
AB13B_ARATH9.280e-1244.93ABC transporter B family member 13 OS=Arabidopsis ... [more]
MSBA_SODGM1.212e-1154.69Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHISS1.212e-1156.25Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIFL1.212e-1156.25Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIDS1.212e-1156.25Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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