FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 193 E +V DA++ +M G+T +VIAHRLST+Q+ DT+AV+ G++VESGTH LL+KG G Y +LV Q Sbjct: 1157 ERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222 HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11 Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPKTE 214 E +V +A+D+ GRT +VIAHRLST+++AD + V+ +G IVE+G+H++L+ G YT+LV+ LQ+ K E Sbjct: 520 ERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGSHDKLMEIDGKYTSLVR--LQQMKNE 588
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12 Identity = 34/65 (52.31%), Postives = 52/65 (80.00%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 193 E +V +A+D +M GRT +V+AHRLSTV++AD +AVV G+I+ESG+H+EL+S G Y++L++ Q Sbjct: 535 EKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQ 599
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E + A+D L K +TVLVIAHRLST++ AD + V+ DG +VE G+H EL+ K G Y L + Q E Sbjct: 516 ERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIEKDGAYAQLHRIQFGE 582
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEP 205 E + +A++ LM+GRT LVIAHRLST++ AD + V+ G +VE+GTH ELL G Y +L + Q P Sbjct: 521 EKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVLDAGRVVETGTHRELLDHNGHYASLHRVQFNGP 588
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB5B_ARATH (ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187 E +V DA+D +M RT +V+AHRLST+++AD +AVV +G I E GTHE L++ +GGVY +LV+ Sbjct: 1161 ERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLINIEGGVYASLVQ 1223
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQEPK 208 E +V A+D++M+ RT +V+AHRLST+++ D + V+ DG++ E+G+H EL+ +GG Y LV Q EP+ Sbjct: 545 EKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQ 613 HSP 2 Score: 69.707 bits (169), Expect = 2.067e-11 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVKRQ 193 E LV +A+D LMKGRT +++AHRLST++ ADTVAV+ G +VE G+H EL+S G Y L Q Sbjct: 1178 EKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQ 1242
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D+L K RT LVIAHRLST++ AD + VV +G IVE G HEEL+S+ GVY L + Q Sbjct: 516 ERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELMSRQGVYAQLHQLQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |