FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L +GRT LVIAHRLST+++ADT+ V+ +G IVE+G H+ LL + GVY L Q Sbjct: 521 EKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAGNHQTLLDRSGVYANLYHSQ 584
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PSYCK (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter cryohalolentis (strain K5) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199 EY + A+D++MK RT LVIAHRL+T++SAD +AV+ G+IVE GTH +L+ G Y + R + Sbjct: 533 EYYIQKALDNIMKNRTTLVIAHRLTTIESADRIAVLDGGQIVELGTHTQLMQLHGHYAQMYARDFE 598
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 181 E LV A++ LM+ RT +++AHRL+T++ AD + V+ DG+I+E GTHE+L+S+ G YT L Sbjct: 549 ERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTML 608
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMA (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup A GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 181 E LV A++ LM+ RT +++AHRL+T++ AD + V+ DG+I+E GTHE+L+S+ G YT L Sbjct: 549 ERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTML 608
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A+D L K RT LVIAHRLST++ AD + VV DG IVE GTH +LL GVY L K Q Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |