FC925362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E V +++ LM+GRT LVIAHRLSTVQ+AD + V+ G+IVE G H ELL+ G+Y +L Q +E Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E V +++ LM+GRT LVIAHRLSTVQ+AD + V+ G+IVE G H ELL+ G+Y +L Q +E Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 E V +++ LM+GRT LVIAHRLSTVQ+AD + V+ G+IVE G H ELL+ G+Y +L Q +E Sbjct: 556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196 EYL+ A+ ++ TVL+IAHRLSTV+ A + V+ G +V+ GTH++LL++GG+Y LV+RQ+ Sbjct: 674 EYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 738
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196 EYL+ A+ ++ TVL+IAHRLSTV+ A + V+ G +V+ GTH++LL++GG+Y LV+RQ+ Sbjct: 674 EYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 738
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_HUMAN (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196 EYL+ A+ ++ TVL+IAHRLSTV+ A + V+ G +V+ GTH++LL++GG+Y LV+RQ+ Sbjct: 678 EYLIQQAIHGNLQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 742
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB11B_ARATH (ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11 Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187 E +V DA+D +M RT +V+AHRLST+++AD +AVV +G I E GTHE L+ +GGVY +LV+ Sbjct: 1209 ERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQ 1271
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11 Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193 E + A++ L K RTVLVIAHRLST++ AD + VV DGEI+E GTH EL+ G Y L + Q Sbjct: 519 ERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIERGTHGELIKHDGAYAQLHRIQ 582
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRANO (Lipid A export ATP-binding/permease protein msbA OS=Francisella novicida GN=msbA PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11 Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 190 E +V A++SL + T +VIAHRLSTV++AD + V+ G++VESG H+ELL +GG+YT + R Sbjct: 523 ERVVQQALESLTESCTTIVIAHRLSTVENADKIVVMDGGKVVESGKHQELLEQGGLYTGSINR 585
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BURS3 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 2 Query: 20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202 A++ LM+GRT LVIAHRLST++ AD + V+ G+IVE G+H+ELL GG+Y L + Q Q+ Sbjct: 530 ALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHGGLYAHLHRIQYQQ 590 The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bpback to top |