FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  V  +++ LM+GRT LVIAHRLSTVQ+AD + V+  G+IVE G H ELL+  G+Y +L   Q +E
Sbjct:  556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  V  +++ LM+GRT LVIAHRLSTVQ+AD + V+  G+IVE G H ELL+  G+Y +L   Q +E
Sbjct:  556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E  V  +++ LM+GRT LVIAHRLSTVQ+AD + V+  G+IVE G H ELL+  G+Y +L   Q +E
Sbjct:  556 ERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRE 622          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196
            EYL+  A+   ++  TVL+IAHRLSTV+ A  + V+  G +V+ GTH++LL++GG+Y  LV+RQ+
Sbjct:  674 EYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 738          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196
            EYL+  A+   ++  TVL+IAHRLSTV+ A  + V+  G +V+ GTH++LL++GG+Y  LV+RQ+
Sbjct:  674 EYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 738          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB9_HUMAN (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196
            EYL+  A+   ++  TVL+IAHRLSTV+ A  + V+  G +V+ GTH++LL++GG+Y  LV+RQ+
Sbjct:  678 EYLIQQAIHGNLQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQM 742          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB11B_ARATH (ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS-KGGVYTALVK 187
            E +V DA+D +M  RT +V+AHRLST+++AD +AVV +G I E GTHE L+  +GGVY +LV+
Sbjct: 1209 ERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQ 1271          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E  +  A++ L K RTVLVIAHRLST++ AD + VV DGEI+E GTH EL+   G Y  L + Q
Sbjct:  519 ERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIERGTHGELIKHDGAYAQLHRIQ 582          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_FRANO (Lipid A export ATP-binding/permease protein msbA OS=Francisella novicida GN=msbA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 190
            E +V  A++SL +  T +VIAHRLSTV++AD + V+  G++VESG H+ELL +GG+YT  + R
Sbjct:  523 ERVVQQALESLTESCTTIVIAHRLSTVENADKIVVMDGGKVVESGKHQELLEQGGLYTGSINR 585          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: MSBA_BURS3 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 2
Query:   20 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            A++ LM+GRT LVIAHRLST++ AD + V+  G+IVE G+H+ELL  GG+Y  L + Q Q+
Sbjct:  530 ALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHGGLYAHLHRIQYQQ 590          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MSBA_BORPE1.212e-1152.24Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORPA1.212e-1152.24Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORBR1.212e-1152.24Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB9_RAT1.212e-1147.69ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
ABCB9_MOUSE1.212e-1147.69ATP-binding cassette sub-family B member 9 OS=Mus ... [more]
ABCB9_HUMAN1.212e-1147.69ATP-binding cassette sub-family B member 9 OS=Homo... [more]
AB11B_ARATH1.212e-1153.97ABC transporter B family member 11 OS=Arabidopsis ... [more]
MSBA_PHOPR1.583e-1153.13Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRANO1.583e-1150.79Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURS31.583e-1154.10Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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