FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHGAPED+NRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R AC
Sbjct:    1 MVKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 72/147 (48.98%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            +AVAVL G  GV GTV F+Q+ +  P  + G + GL PG HGFHVH  GD+TNGC S GPHFNP  K HG P+DD RH              A F + D+ + + G ++++GR++VVHA  DDLGKG     E S  TGN G RVAC
Sbjct:    4 RAVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVAC 150          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.476e-33
Identity = 75/147 (51.02%), Postives = 86/147 (58.50%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   V GTV+F Q+ + GP TV+  + G  P    GFHVH  GD TNGC S GPHFNP  K HG P D  RH              A   + D+ + L+G NSI+GR VV+H   DDLGKGGH  S  TGNAG R AC
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 76/147 (51.70%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGD-GPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV+ G   V G+V F QE + GPTT++  ++G       G H+H  GD TNGC S GPHFNP GK HG   D+NRH              +  TV DN I L GP S+IGR VVVHA  DDLGKG  E S  TGNAG R AC
Sbjct:    1 MVKAVAVVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 75/147 (51.02%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVA + G   + GTV+F Q E + PTT++ +++G       G HVH  GD TNGC S GPHFNP G+ HGAP D+ RH              AT +V D+ I L GP S+IGR VVVH+  DDLGKG +E SK TGNAG R AC
Sbjct:    1 MVKAVATVRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 75/147 (51.02%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MV+AVAVL G  GV G V F Q  +  PTTVS  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HGAP D+ RH              A  +  D+ I L GP S++GR+VV+HA  DDLGKG  E S  TGNAG R AC
Sbjct:    1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 75/147 (51.02%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGP-TTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   V GTV+F Q  +   TTVS +++G  P    GFH+H  GD TNGC S GPHFNP GK HGAPED+ RH              +  +  D  I L G  S++GR +VVHA  DDLG+G  E SK TGNAG R AC
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 74/147 (50.34%), Postives = 89/147 (60.54%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   + GTV+F Q  +  PTTVS +++G  P    G H+H  GD TNGC S GPH+NP  K HGAP D+ RH              A  +V D  I + G  SI+GR +VVHA  DDLG+GG+E SK TGNAG R AC
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 70/145 (48.28%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V G + F Q+ +G P  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+D+ RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    3 LKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 74/147 (50.34%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV G ++ + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHGAPED+NRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R AC
Sbjct:    1 MVKAVAVRGDSK-ISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPAC 146          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_ASPOR6.627e-3451.02Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_HAECO1.130e-3348.98Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_YARLI1.476e-3351.02Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_PODAN3.289e-3351.70Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_BOTFU4.296e-3351.02Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_YEAST5.610e-3351.02Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_EMENI7.327e-3351.02Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_HUMLT9.570e-3350.34Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_HORSE9.570e-3348.28Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_ASPFL1.632e-3250.34Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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