FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 71/147 (48.30%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV V+ G   V G++ F QE +  PT ++  +SG       G H+H  GD TNGC S GPHFNP  K HGAPED NRH              +  TV D+ + L GP S+IGR +VVH   DDLGKG +E S  TGNAG R AC
Sbjct:    1 MVKAVCVVRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 72/147 (48.98%), Postives = 89/147 (60.54%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTV-SGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            +AVAVL G E V GT+  TQ+ +    V  G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P+ + RH              A   + D  + L GPN+++GR++VVHA  DDLG+G     E SK TGNAG R AC
Sbjct:   26 RAVAVLRG-ETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAAC 171          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 76/147 (51.70%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRH-AXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKA+ V+ G   V GT+ F+QE +G P  V+G++SGL  G HGFH+H  GDT+NGC+S G HFNP   EHG P    RH               A   + DN I L G  SIIGR +VVH + DDLG GG+ LSKTTGNAG RVAC
Sbjct:    1 MVKAICVVKGAV-VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   84 AVLGGTEG-VKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AV GG      G +   Q G     ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HGAPED NRH                  + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSKTTGNAG RVAC
Sbjct:   38 AVKGGNPAKTVGIIDLVQTGT-LVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVAC 177          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 74/147 (50.34%), Postives = 83/147 (56.46%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MV AVAVL G   V G V F QE  D  T +S  ++G       GFH+H  GD TNGC S GPHFNP  K HGAPED+ RH              +  ++ D  I L GP SI+GR VVVHA  DDLGKGG   S  TGNAG R AC
Sbjct:    1 MVNAVAVLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 77/160 (48.12%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   54 RSHSTMV------KAVAVLGGTEGVKGTVSFTQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGG---HELSKTTGNAGGRVAC 503
            RSHS  +      +AVAVL G  GV G + F Q   G  TT+SGS+SGL PG HGFHVH  GD TNGC S G H+NP GK HG P D  +H              A   +    I L GP S+IG ++VVHA+ DDLG+G     E S  TGNAG R+AC
Sbjct:   33 RSHSNGMHGNGARRAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLAC 192          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 71/147 (48.30%), Postives = 86/147 (58.50%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            +AVAVL G + V GT+  TQ  +  P  + G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P  + RH              A   + D  I L G N++IGR++VVHA  DDLG+G     E S  TGNAG R AC
Sbjct:   26 RAVAVLRG-DVVSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAAC 171          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 72/147 (48.98%), Postives = 86/147 (58.50%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKP-GPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL G   + G V+F QE D  PTT+S  +S        GFH+   GD TNGC S GPHFNP GK HG   D+NRH              +  ++ D  I L GP+S+IGR VV+HA  DDLGKGG++ S  TGNAG R AC
Sbjct:    1 MVKAVCVLRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KA+ ++ G   V G + F QE  + P  +SG L  L  G HGFHVH  GDT+NGC S G HFNP  ++HGAP+ + RH             + T   ++DN + L GP++IIGR++VVH D DDLG   H LSKTTGN+GGR+ C
Sbjct:    1 MKAICIISGD--VHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   48 VLRSHSTMVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            V+R+ + + KA A    TE + GT+ F Q G     ++GS+SGL  G HGFH+H  GDT NGC+S G H+NP    HGAP+D NRH                 +V D+   LSG  SIIGR+VV+H   DDLG+G  + SKTTGNAG R+AC
Sbjct:   21 VIRARAYIFKAEAGKIPTELI-GTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLAC 170          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_COLGL2.784e-3248.30Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_CAEEL3.637e-3248.98Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC4_DICDI6.203e-3251.70Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODE_HAECO8.101e-3248.94Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_KLULA8.101e-3250.34Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODE_ONCVO1.382e-3148.13Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAEBR1.382e-3148.30Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_PAESI1.805e-3148.98Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_NPVAC1.528e-3046.58Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODE_CAEEL1.995e-3046.71Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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