FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 64/146 (43.84%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MV A+ ++ G  GV+G V+ +QE +G P  ++G++SGL PG HG HVH  GDT+NGC+S G H+NP  +EHG+P D  RH              AT ++ D  + L G  S++GR +V+H+D DD G+G    SKT G++G RV C
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 68/146 (46.58%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KA+ ++ G     G + F Q   D P +++G L  L  G HGFHVH  GDT+NGC S G HFNP  + HGAP+   RH               T   + DN I L GP SI+GR++VVH D DDLG G H LSKTTGN+GGR+ C
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AVA+LGG   V+G V F Q       + G++ GL+PG HG HVH  GD TN C S G HFNP G  HG P+D +RH              A F + D Q+ +     +IGR++++    DDLG+GGH LSK TGN+G R+AC
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLAC 227          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AVA++ G+  V+G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++VV    DDLG+GGH LSK TGN+G R+AC
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLAC 227          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 63/142 (44.37%), Postives = 81/142 (57.04%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AVA+LGG+  V+G V F Q       + G++ GLKPG HG HVH  GD T  C S G HFNP G  HG P+D +RH              A F + D  + +     +IGR++V+    DDLG+GGH LSK TGN+G R+AC
Sbjct:   89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLAC 227          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 62/142 (43.66%), Postives = 81/142 (57.04%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AVA+L G   ++G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+ +     +IGR++V+    DDLG+GGH LSK TGN+G R+AC
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLAC 227          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 70/145 (48.28%), Postives = 83/145 (57.24%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPG-PHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            V A+AVL G   VKGTV F +E      +S  +SGLKP   HGFHVH  GD T+GC S   HFNP G  HG P+   RH              A ++  D+ I L G  +IIGRA+VVHAD DDLG GG+  S  TGNAG R+ C
Sbjct:   35 VSAIAVLEGP--VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGC 176          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            KAVAVL  ++ V G + F Q      TT+ G+++GL PG HGFH+H  G   NGC S   H+NP  K HG P ++ +H              A   ++ N I LSGP S+IGR++VVHA+PDDLGKG     E S  TGNAG R+ C
Sbjct:   41 KAVAVLK-SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVC 186          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 68/146 (46.58%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   69 MVKAVAVLGGTEG-VKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVA 500
            MVKAV VL GT G V GTV F QE D  P  ++G + GL PG HGFHVHA GD TN               H  P D +RH              A   + D  + L+GP SIIGR +V+H   DDLGKGG++ S  TGNAGGR+A
Sbjct:    1 MVKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC6_DICDI3.404e-3043.84Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_NPVOP1.689e-2946.58Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
CCS_HUMAN6.419e-2944.37Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT8.384e-2944.37Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_PIG1.430e-2844.37Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_MOUSE1.430e-2843.66Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODC_PBCV11.868e-2848.28Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODE_DIRIM4.161e-2844.90Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_LAMCR1.748e-2646.58Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODC_DROOB1.748e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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