FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KGTV F QE  + P  V+G + GL  G HGFHVH  G+ TNGCMS+GPHFNP  KEHGAP D NRH                 ++ D++I L G NSIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 69/147 (46.94%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MV+AVAVL G   V G V+F Q + +   +V   L G       GFH+H  GD TNGC S GPHFNP GK HG      RH                 T  D+ I L G NSIIGR +V+HA  DDLGKG  E S  TGNAG R AC
Sbjct:    1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 56/108 (51.85%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431
            KG V F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPH+NP  KEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 56/131 (42.75%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  114 GTVSFTQEGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            G V FTQ GD    V+GS++GL PG   G HVH  G   N C+  GPHFNP  + HG      RHA             A F        L   +  IGRA+V+HA+ DDLG+   E S+TTGN+G R+AC
Sbjct:   47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLAC 176          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 55/138 (39.86%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  108 VKGTVSFTQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            + G V F Q G     +    + G  +      H  HVH  GD + GC STGPH+NP G  H   P D                  AT         L+GP+SI+GRAVVVHA  DDLGKGG++ S   GNAG R+AC
Sbjct:   85 ITGLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHPQHPGDFGNFVVRDGRLWKHRMGLAT--------SLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLAC 214          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  201 HVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            HVH  GD + GC STGPH+NP    H   P D    A             A          L+GP+SI+GRAVVVHA  DDLG+GG++ S   GNAG R+AC
Sbjct:  114 HVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLAC 207          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 56/161 (34.78%), Postives = 70/161 (43.48%), Query Frame = 3
Query:   39 PRGVLRSHSTMVKAVAVLGGTEGVKGTVSFTQEGDGPTT-----VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            P G L +   +  +  +      V G V F Q G G        + G            HVH  GD + GC STG H+NP   +H   P D    A             A          L+GP+SI+GRAVVVHA  DDLG+GG+  S   GNAG R+AC
Sbjct:   59 PAGALHAVCRVQPSATLDAAQPRVSGLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHPQHPGDFGNFAVRDGRLWKYRSGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLAC 211          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_DROTO2.982e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_SCHPO3.894e-2646.94Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_DROPE6.643e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB6.643e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI6.643e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMD1.933e-2551.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_SCHMA6.022e-1942.75Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODE_RAT6.658e-1839.86Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_HUMAN8.139e-1645.10Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODE_RABIT1.388e-1534.78Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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