FC925396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26 Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431 KGTV F QE + P V+G + GL G HGFHVH G+ TNGCMS+GPHFNP KEHGAP D NRH ++ D++I L G NSIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26 Identity = 69/147 (46.94%), Postives = 78/147 (53.06%), Query Frame = 3 Query: 69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503 MV+AVAVL G V G V+F Q + + +V L G GFH+H GD TNGC S GPHFNP GK HG RH T D+ I L G NSIIGR +V+HA DDLGKG E S TGNAG R AC Sbjct: 1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNAC 147
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHGAP D+NRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHGAP D+NRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26 Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431 KGTV F QE + P V+G GL G HGFHVH GD TNGCMS+GPHFNP KEHGAP D+NRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25 Identity = 56/108 (51.85%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 111 KGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHAD 431 KG V F QE + P V+G + GL G HGFHVH GD TNGCMS+GPH+NP KEHGAP D+NRH ++ D++I L G +SIIGR VVVHAD Sbjct: 6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 56/131 (42.75%), Postives = 69/131 (52.67%), Query Frame = 3 Query: 114 GTVSFTQEGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503 G V FTQ GD V+GS++GL PG G HVH G N C+ GPHFNP + HG RHA A F L + IGRA+V+HA+ DDLG+ E S+TTGN+G R+AC Sbjct: 47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLAC 176
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18 Identity = 55/138 (39.86%), Postives = 67/138 (48.55%), Query Frame = 3 Query: 108 VKGTVSFTQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503 + G V F Q G + + G + H HVH GD + GC STGPH+NP G H P D AT L+GP+SI+GRAVVVHA DDLGKGG++ S GNAG R+AC Sbjct: 85 ITGLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHPQHPGDFGNFVVRDGRLWKHRMGLAT--------SLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLAC 214
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16 Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 3 Query: 201 HVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503 HVH GD + GC STGPH+NP H P D A A L+GP+SI+GRAVVVHA DDLG+GG++ S GNAG R+AC Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLAC 207
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 56/161 (34.78%), Postives = 70/161 (43.48%), Query Frame = 3 Query: 39 PRGVLRSHSTMVKAVAVLGGTEGVKGTVSFTQEGDGPTT-----VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGA-PEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503 P G L + + + + V G V F Q G G + G HVH GD + GC STG H+NP +H P D A A L+GP+SI+GRAVVVHA DDLG+GG+ S GNAG R+AC Sbjct: 59 PAGALHAVCRVQPSATLDAAQPRVSGLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHPQHPGDFGNFAVRDGRLWKYRSGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLAC 211 The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 142
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bpback to top |