FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.919e-49
Identity = 94/143 (65.73%), Postives = 106/143 (74.13%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAVAVL GT  V+G V+ TQ+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HGAP D+ RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+AC
Sbjct:   69 KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 211          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.796e-47
Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV+VL GT  V+G V+ TQ+ +GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+AC
Sbjct:   52 KAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLAC 194          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.227e-47
Identity = 90/143 (62.94%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAVAVL GT  V+G V+ TQ+  GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VD QIPLSGPNS++GRA VVH   DDLGKGGHELS +TGNAGGR+AC
Sbjct:   61 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLAC 203          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.826e-47
Identity = 90/143 (62.94%), Postives = 105/143 (73.43%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAVAVL G   V+G V+ TQE + PTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS+IGRA+VVH   DDLGKGGHELS +TGNAGGR+AC
Sbjct:   52 KAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLAC 194          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.594e-46
Identity = 89/143 (62.24%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAVAVL G   V+G V+ +Q+ DGPTTV+  ++GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAP D+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+AC
Sbjct:   67 KAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 209          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.594e-46
Identity = 89/145 (61.38%), Postives = 103/145 (71.03%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            ++KAVAV+ G   VKG++ F Q+  G T V G ++GL PG HGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RHA             A  +V D QIPLSG +SI+GRAVVVHAD DDLG+ GHELSKTTGNAG RV C
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.423e-44
Identity = 86/132 (65.15%), Postives = 97/132 (73.48%), Query Frame = 3
Query:  108 VKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            V+G V+ +QE +GPTTV   L+GL PG HGFH+H  GDTTNGCMSTG HFNP    HGAPEDD RHA             A  T+VDNQIPLSGP+S+IGRA+VVH   DDLGKGGHELS TTGNAGGR+AC
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 133          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 89/143 (62.24%), Postives = 100/143 (69.93%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAVAVL GT  V G V+  QE DGPTTV+  ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP D  RHA             A  T+VD+QIPLSG NS++GRA VVH   DDLGKGGHELS TTGNAGGR+AC
Sbjct:   66 KAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLAC 208          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.226e-44
Identity = 88/146 (60.27%), Postives = 99/146 (67.81%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +VKAV V+ G    KGTV F QEG+G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 87/146 (59.59%), Postives = 99/146 (67.81%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +VKAV V+ G    KGTV F QE +G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHGAP D+NRH                  + D++I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 145          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODCP_PETHY1.919e-4965.73Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PEA1.796e-4762.24Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_ORYSJ5.227e-4762.94Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA6.826e-4762.94Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SOLLC2.594e-4662.24Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR2.594e-4661.38Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODCP_PINSY1.423e-4465.15Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_ZANAE3.171e-4462.24Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_DROVI9.226e-4460.27Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DROWI2.684e-4359.59Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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