FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 84/146 (57.53%), Postives = 98/146 (67.12%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 81/132 (61.36%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  111 KGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KGTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 137          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 83/144 (57.64%), Postives = 99/144 (68.75%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G+  VKGT++F Q+  G  TV+G +SGL PG HGFH+H  GD TNGC S+G HFNP  + HGAPEDD RH              AT  + D  I L+G +SIIGRAVVVHA  DDLGKGGHE SKTTG+AGGR++C
Sbjct:    3 IKAVCVLVGS--VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-40
Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +VKAV V+ G    KGTV F QE  + P  VSG + GL    HGFHVH  GD TNGCMS+GPHFNP GKEHGAP D+NRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ C
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.083e-40
Identity = 82/146 (56.16%), Postives = 92/146 (63.01%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +VKAV V+ G   VKGTV F Q+    P  V+G ++GL  G HGFHVH  GD TNGC S GPHFNP G  HGAP D NRH                  + D  I L G NSI+GR +VVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:    2 VVKAVCVINGD--VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 6.842e-39
Identity = 79/145 (54.48%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL G+  VKG V F Q+ +G  +V G + GL  G HGFH+H  GD TNGCMS G HFNP  K HGAP D +RH              A F + D+ I L GPNSIIGR  VVH   DDLGKGG++ S  TGNAGGR+AC
Sbjct:    1 MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHV-GDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLAC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 79/145 (54.48%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL G+  VKG V F Q+ DG  TV G + GL  G HGFH+H  GD TNGC+S GPHFNP  K HG+P+D +RH              A F   D QI L G  SIIGR  VVH   DDLGKGG + S  TGNAGGR+AC
Sbjct:    1 MVKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHV-GDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLAC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 75/143 (52.45%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+G + F Q+ +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I LSG NSIIGR +VVH  PDDLGKGG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 79/144 (54.86%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL GT  V GTV F QEG+  P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH              A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+AC
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 78/145 (53.79%), Postives = 95/145 (65.52%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PED+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+AC
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLAC 147          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_DROTE4.286e-4157.53Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROBS4.286e-4161.36Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_HALRO1.629e-4057.64Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_DROER1.629e-4057.53Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_CERCA8.083e-4056.16Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC2_XENLA6.842e-3954.48Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC1_XENLA1.524e-3854.48Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CAVPO3.396e-3852.45Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_DANRE4.435e-3854.86Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_CALJA4.435e-3853.79Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
back to top