FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 73/144 (50.69%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV V+ G   V+G + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH              A   + D+ I L+GP+ IIGR +VVHA  DDLG+GG   SK TGNAG R+AC
Sbjct:    4 LKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 74/144 (51.39%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V+GT+ F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D  RH              A  ++ D+ I LSG  SIIGR +VVH   DDLGKG +E S  TGNAG R+AC
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 80/147 (54.42%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV+ G   V+GTV F QE +  PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HGAPEDD RH              A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R AC
Sbjct:    1 MVKAVAVVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 79/156 (50.64%), Postives = 96/156 (61.54%), Query Frame = 3
Query:   48 VLRSHSTMVKAVAVLGGTEG-VKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            + R+ +    A+AVL    G + GT+ F Q+ +  TT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P D+ RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAGGRVAC
Sbjct:   38 IRRTITKTATAIAVLHSDNGNINGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVAC 192          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+GT+ F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D  RH              AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 77/143 (53.85%), Postives = 91/143 (63.64%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            AV V+ G E V G V FTQE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HGAP D++RH                 T+ D  I L G ++I+GR +VVHAD DDLGKGG   S TTG AG R+ C
Sbjct:    5 AVCVIKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 78/147 (53.06%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   V G ++FTQE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HGAP D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R AC
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 79/147 (53.74%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL G   V GTV+F QE +  PTT++  L+G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH              A  ++ D+Q+ L GP+S+IGR VVVHA  DDLGKGG+E S  TGNAG R AC
Sbjct:    1 MVKAVCVLRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 75/143 (52.45%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 78/147 (53.06%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G  GV G V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG+PED+NRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R AC
Sbjct:    1 MVKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPAC 147          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CHICK3.178e-3650.69Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_CANFA3.178e-3651.39Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_CANAL3.178e-3654.42Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODE_BRUPA4.151e-3650.64Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_PIG4.151e-3651.05Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC1_DICDI4.151e-3653.85Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_CRYGA5.422e-3653.06Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_PAETN7.081e-3653.74Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_BOVIN7.081e-3652.45Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_ASHGO7.081e-3653.06Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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