FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35
Identity = 74/145 (51.03%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V+GT+ F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 75/147 (51.02%), Postives = 93/147 (63.27%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G+ GV G V+  Q  +  PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HGAP+D+NRH              A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R AC
Sbjct:    1 MVKAVAVLRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 78/146 (53.42%), Postives = 93/146 (63.70%), Query Frame = 3
Query:   78 AVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVAC 503
            A+AVL G + V G + F Q+ +G PTTV+G + GL PG HGFH+H  GDTTNGC+S GPHFNP  K HG   D+ RH             TA  ++ D  I L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVAC
Sbjct:    5 AIAVLRG-DTVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVAC 149          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 73/145 (50.34%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 72/145 (49.66%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            + A+ V+ G +GV G ++F Q +   P  +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG+P D+NRH              +   + DN I L G NSIIGR++VVH   DDLG+G  + SK TGNAG R+ C
Sbjct:    1 MSAICVIKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGC 144          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 73/145 (50.34%), Postives = 88/145 (60.69%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            +KAV VL G   V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 78/147 (53.06%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HGAPED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R AC
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 74/143 (51.75%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +AC
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R AC
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+GT+ F  +G     V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+AC
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLAC 145          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_MOUSE1.208e-3551.03Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_CANGA1.577e-3551.02Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_ONCVO2.691e-3553.42Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_HYLLA2.691e-3550.34Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC5_DICDI3.514e-3549.66Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_RAT4.590e-3550.34Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_ASPFU4.590e-3553.06Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_CAPHI5.994e-3551.75Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CORMI7.829e-3551.70Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_CEREL7.829e-3551.05Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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