FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.022e-34
Identity = 74/146 (50.68%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGS-LSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            ++KAV VL G     GTV F QEG+      G  L GL PG HGFHVH  GD TNGC+S GPHFNPA K+H  P+D++RH              A   + D +I L+GP SIIGR +V+H   DDLG+GG+E S  TGNAG R+AC
Sbjct:    2 VLKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 146.362 bits (368), Expect = 1.335e-34
Identity = 78/147 (53.06%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHGAPEDDNRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R AC
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 73/144 (50.69%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 73/144 (50.69%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HGAPEDD RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R AC
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HGAPEDD RH              A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R AC
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 78/147 (53.06%), Postives = 88/147 (59.86%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAV+ G   VKGTV F QE +  PTT++  +SG  P    GFH+H  GD TNGC S GPHFNP G  HG    + RH              A  TV DN + L GP S+IGR VVVHA  DDLGKGG+E S  TGNAG R AC
Sbjct:    1 MVKAVAVVRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPAC 147          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G   V+ T+ F Q+G GP  V G ++GL  G H FHVH  GD   GC S GPHFNP  K+HG P+D+ RH              A   + D+ I LSG  S+IGR +VVH   DDLGKGG++ S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLAC 146          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 74/145 (51.03%), Postives = 90/145 (62.07%), Query Frame = 3
Query:   75 KAVAVLGGTEG-VKGTVSFTQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            KAV VL G    VKG ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+AC
Sbjct:    4 KAVCVLKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLAC 148          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 76/147 (51.70%), Postives = 89/147 (60.54%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G   V GTV F QE +  PTT++  ++G       GFH+H  GD TNGC S GPHFNP GK HGAP D+ RH              A  +V D  + L GP+S+IGR VV+HA  DDLGKG +E S  TGNAG R AC
Sbjct:    1 MVKAVAVLRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPAC 147          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_XIPGL1.022e-3450.68Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC1_DEBHA1.335e-3453.06Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_PANTR1.744e-3450.69Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN1.744e-3450.69Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_ASPNG1.744e-3451.70Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC1.744e-3451.70Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_NEUCR2.278e-3453.06Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_RABIT3.885e-3448.95Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_PONPY6.627e-3451.03Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_CLAPU6.627e-3451.70Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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