FC925399

Overview
NameFC925399
Unique NameFC925399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1988 contig Ccv1_Contig1988:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 80/142 (56.34%), Postives = 97/142 (68.31%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVA  D    V VNG  CK+P    ++DFF +     P NT N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPH+HPRA+E+  VLEGTLYVGFVTS+   N L +KV++KGDVFVFP+ + HFQ N
Sbjct:   25 DPSPLQDFCVA--DMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDVFVFPKAMIHFQMN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 79/141 (56.03%), Postives = 94/141 (66.67%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD+CVA  D   G+ VNG  CK      A DFFF+G+GKP    N +G   T ANVE+I GLNTLG+S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L AK + KG+VFVFP+GL H+Q N
Sbjct:   23 DPDTLQDLCVA--DRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITT---ANKLFAKTVKKGEVFVFPRGLIHYQKN 158          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.878e-36
Identity = 80/142 (56.34%), Postives = 97/142 (68.31%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVA  D K  V VNG  CK+P    ++DFF +     P +T N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPHIHPRA+E+  VLEGTLYVGFVTS+   N L +KV++KGD FVFP+ + HFQ N
Sbjct:   25 DPSPLQDFCVA--DMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDTFVFPKAMIHFQMN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.978e-35
Identity = 81/142 (57.04%), Postives = 95/142 (66.90%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            D   LQD CVA  D  +G+ VNG  CKDP     EDF+F GL     TAN  +G   T ANVE++PGLNTLG+S  RIDYAP G  PPH+HPRASE   VLEG L+VGF+T+      LI+K +NKGDVFVFP+ L HFQ N
Sbjct:   23 DTNMLQDFCVA--DLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVFVFPKALLHFQQN 159          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.282e-34
Identity = 80/141 (56.74%), Postives = 93/141 (65.96%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQDVCVA  D    V +NG  CK      A+DFFF+GL  PGNT N  G + T ANV+  PG+NTLG+S  RIDYAP GQ PPH HPRA+EI  VLEG L VGF+T+    N L  K +  G+VFVFP+GL HFQ N
Sbjct:   26 DPDMLQDVCVA--DLASPVKLNGFPCKAN--VTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITT---ANKLFTKTVTAGEVFVFPRGLVHFQQN 159          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.856e-34
Identity = 78/142 (54.93%), Postives = 95/142 (66.90%), Query Frame = 2
Query:   92 DPGHLQDVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQDVCVA     K  + +NG  CK  +   A DFFF GL K GNT N +G   T A+VE +PGLNT+G+S  RIDYAP+G  PPH HPRA+EI  V+EG+L VGFVT+    N L  + + KG+VFVFP+GL HFQ N
Sbjct:   24 DPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTT---ANKLFTRTVCKGEVFVFPRGLVHFQKN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.872e-34
Identity = 78/142 (54.93%), Postives = 94/142 (66.20%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQDVCVA      G   +NG  CK  +   A DFFF GL   GNT N +G   T A+VE++PGLNT+G+S  RIDYAP+G  PPH HPRA+EI  V EGTL VGFVT+    N L  + ++KG+VFVFP+GL HFQ N
Sbjct:   24 DPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTT---ANKLFTRTVSKGEVFVFPRGLVHFQRN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD+CVA  D    V VNG  CK       +DF+F GL   GNT N  G   T ANVE++PGLNTLG+S  RIDYAP G  PPH HPRA+E+  VL+GTL VGF+T+    N L  K ++ GDVFVFP+GL HFQ N
Sbjct:   27 DPDLLQDICVA--DLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITT---ANKLYTKTISAGDVFVFPRGLLHFQKN 160          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 9.188e-33
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            D   LQD+CVA  D    + VNG  CK      AEDFF + L K G T N  G   T ANV++IPGLNTLG+S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N LIAK + KG+ FVFP+GL HFQ N
Sbjct:   22 DADALQDLCVA--DYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITT---TNQLIAKTIAKGETFVFPKGLVHFQKN 157          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.567e-32
Identity = 74/141 (52.48%), Postives = 90/141 (63.83%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD+CVA  D   G  +NG  CK+       DFFF+G+ KP    + +G   T ANVE+IPGLNTL +S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L  K +  G+VFVFP+GL HFQ N
Sbjct:   24 DPDALQDLCVA--DKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITT---ANKLFTKTIKIGEVFVFPRGLVHFQKN 159          
The following BLAST results are available for this feature:
BLAST of FC925399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL83_ORYSJ6.798e-3656.34Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH6.798e-3656.03Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL84_ORYSJ8.878e-3656.34Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL23_ARATH1.978e-3557.04Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL11_ORYSJ1.282e-3456.74Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL13_ORYSJ2.856e-3454.93Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL32_ORYSJ4.872e-3454.93Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL52_ORYSJ8.310e-3455.32Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
RHRE_PEA9.188e-3355.32Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL22_ARATH1.567e-3252.48Germin-like protein subfamily 2 member 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH11FM1 TF Citrus clementina cDNA clone KN0AAP3YH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925399 ID=FC925399; Name=FC925399; organism=Citrus clementina; type=EST; length=516bp
CACATCCTGTGACTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTT
TTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGC
CATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTT
TGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATT
TCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGT
GTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCT
TGGCATATCAGCATTCCGTATTGACTATGCACCATATGGCCAAAGGCCAC
CTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACT
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAATC
ACTTCCAATTCAACAA
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