FC925399

Overview
NameFC925399
Unique NameFC925399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1988 contig Ccv1_Contig1988:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.560e-32
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            D   LQDVCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL HFQ N
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT---ANVLVSKQITKGEVFVFPRGLVHFQKN 167          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.327e-31
Identity = 81/147 (55.10%), Postives = 95/147 (64.63%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKP------GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVA  DP   V VNG  CKDP    A+DFFFSG+G+P      G TA+R     T  +V+ IPGLNTLG SA R+D AP G  PPH HPRASE  +VL G +Y GFVTS   ++ ++AKVL +GDVF  PQGL HF  N
Sbjct:   30 DPNPLQDFCVA--DPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRR-YGFTARSVD-IPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTS-YPDSRVVAKVLRRGDVFAVPQGLVHFLHN 171          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.733e-31
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            D   LQDVCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE+  V+EG L VGF+T+    N L++K + KG+VFVFP+GL HFQ N
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT---ANVLVSKKIIKGEVFVFPRGLVHFQKN 167          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.860e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVF-VNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPY-GQRPPHIHPRASEIFLVLEGTLYVGFV--TSDQLNNTLIAKVLNKGDVFVFPQGLNHFQ 508
            DP  LQD+CVA      G   VNG  CK      AEDFFF GLGKP +  + N +G   T A VE+IPGLNTLG+S  R+DYAP+ G  PPH HPRA+EI  V +G L VGFV  T+   ++ LI +V+ KG VFVFP+GL H++
Sbjct:   29 DPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYE 173          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.041e-31
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +D   LQD CV   D K    +NG  CK      A DFFFSGLG P NT+   GV  + ANV   PGLNTLG+S   +++AP G  PPH HPRA+E  +V+EG+++VGF+T+   NNTL +KVLN G++FV P+GL HFQ+N
Sbjct:   28 SDSDPLQDFCVG--DLKASPSINGFPCKSS--VSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTT---NNTLFSKVLNAGEMFVVPRGLVHFQWN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.041e-31
Identity = 72/142 (50.70%), Postives = 93/142 (65.49%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +D   LQD CV   D K    +NG  CK      A DFF+SGLG P +T+N  GV    ANV   PGLNTLGIS   ++ AP G  PPH+HPRA+E+  V+EG+++VGF+++   NNTL +KVLN G+ FV P+GL HFQ+N
Sbjct:   28 SDSDPLQDFCVG--DLKASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLST---NNTLFSKVLNAGEAFVIPRGLVHFQWN 162          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.242e-29
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            ++P  LQD CVA  D K  V VNG  CK P     +DF FS  L K GNT+   G   TD NV + PG NTLG+S  R+D+AP G  PPHIHPRA+EI +V++G L VG + S    N L ++V+  G+ F+ P+GL HFQFN
Sbjct:   24 SNPHPLQDFCVADLDGK-AVSVNGHMCK-PMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFN 164          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            TDP  LQD CVA  D K  V VNG  CK P     +DF FS  L K GNT+   G   T+ +V + PG NTLG+S  R+D+AP G  PPHIHPRA+EI +V++G L VG + S    N L ++V+  G+ F+ P+GL HFQFN
Sbjct:   24 TDPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFN 164          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.613e-29
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +DP  LQD CVA  D K  V VNG  CK P     +DF FS  L K GNT+   G   T+ +V + PG NTLG+S  R+D+AP G  PPHIHPRA+EI +V++G L VG + S    N L ++V+  G+ FV P+GL HFQFN
Sbjct:    1 SDPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFN 141          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.051e-28
Identity = 69/143 (48.25%), Postives = 90/143 (62.94%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +DP  LQD CVA  D K  V VNG  CK P     +DF FS  L K GNT+   G   T+ +V + PG NTLG+S  R+D+AP G  PPH+HPRA+EI +V++G L VG + S    N L ++V+  G+ F+ P+GL HFQFN
Sbjct:   24 SDPDPLQDFCVADLDGK-AVSVNGHPCK-PMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFN 164          
The following BLAST results are available for this feature:
BLAST of FC925399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
NEC1_NICPL4.560e-3255.32Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL51_ORYSJ1.327e-3155.10Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS1.733e-3155.32Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GL14_ORYSJ3.860e-3152.41Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GLT2_ARATH5.041e-3151.41Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH5.041e-3150.70Germin-like protein subfamily T member 1 OS=Arabid... [more]
GER3_WHEAT1.242e-2949.65Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GER2_WHEAT1.622e-2949.65Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
OXO1_HORVU3.613e-2949.65Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
OXO2_HORVU1.051e-2848.25Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH11FM1 TF Citrus clementina cDNA clone KN0AAP3YH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925399 ID=FC925399; Name=FC925399; organism=Citrus clementina; type=EST; length=516bp
CACATCCTGTGACTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTT
TTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGC
CATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTT
TGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATT
TCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGT
GTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCT
TGGCATATCAGCATTCCGTATTGACTATGCACCATATGGCCAAAGGCCAC
CTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACT
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAATC
ACTTCCAATTCAACAA
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