FC925399

Overview
NameFC925399
Unique NameFC925399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1988 contig Ccv1_Contig1988:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            TD   LQD CVA  D K  V VNG  CK P  A  ++F FS     G    AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +  + N   +KV+  G+ FV P+GL HFQFN
Sbjct:   29 TDADPLQDFCVADLDSK--VTVNGHACK-PASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFN 169          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 69/142 (48.59%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            T    +QD CVA     DG    G  CK P +    DF +SGLG  GNT N      T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL HFQ N
Sbjct:   15 TSHASVQDFCVADYKAPDGPA--GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVN 151          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.416e-27
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            TD   LQD CVA  D K  V VNG  CK P  A  ++F FS     G    AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL HFQFN
Sbjct:   29 TDADPLQDFCVADLDSK--VTVNGHACK-PASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFN 169          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.533e-27
Identity = 68/137 (49.64%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  104 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +QD CVA     DG    G  CK P      DF +SGLG  GNT N +    T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL HFQ N
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVN 151          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 66/144 (45.83%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGN--TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            TD   LQD CVA  D    V VNG  CK P  A  ++F FS     G    AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH+HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL HFQFN
Sbjct:   27 TDADPLQDFCVA--DLNSEVTVNGHACK-PASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFN 167          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.285e-26
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   89 TDPGHLQDVCVAINDPK-DGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +DP  LQD CV+        +F+NGK CKDP  A   DF  S L +PGNT  +   ++ T      +PGLNT+G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  +  + L+ G+ FVFP+GL HF +N
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYN 158          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.192e-26
Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            D   LQD+CVA  D +    V+G  CK      ++DFF   + +  +T+N  GV+ T A V   PGLNTLG+S  R D AP G  PPH HPRASE+ LVL G + VGF T+    N L +KV+ + ++FV P+GL HFQ N
Sbjct:   30 DSPPLQDICVA--DLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVVPRGLQHFQLN 165          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 67/137 (48.91%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  104 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +QD CVA     +G    G  CK P   +  DF FSGLG  GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL HFQ N
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVN 156          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.421e-25
Identity = 66/142 (46.48%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVA  D +  V +NG  CK    A  E  F S L   G+  AN  G + T  +V   PG+NTLG+S  RID+AP G  PPH+HPRA+E+ +VL G L VG + S    N   ++V+  G+ FV P+GL HFQFN
Sbjct:   28 DPDPLQDFCVADLDSE--VTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFN 167          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.203e-24
Identity = 62/137 (45.26%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  104 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +QD CVA  DPK     +G  CK+P      DF F+GLG  GNT+N +    T A      G+N LG+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL HFQ N
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLNRGDSMVFPQGLLHFQLN 153          
The following BLAST results are available for this feature:
BLAST of FC925399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL34_ORYSJ1.982e-2746.53Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
AB19B_PRUPE1.982e-2748.59Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL36_ORYSJ4.416e-2746.53Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
AB19A_PRUPE7.533e-2749.64Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL35_ORYSJ9.839e-2745.83Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH1.285e-2642.36Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL12_ORYSJ2.192e-2646.10Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
ABP20_PRUPE8.329e-2648.91Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL33_ORYSJ1.421e-2546.48Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL33_ARATH1.203e-2445.26Germin-like protein subfamily 3 member 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH11FM1 TF Citrus clementina cDNA clone KN0AAP3YH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925399 ID=FC925399; Name=FC925399; organism=Citrus clementina; type=EST; length=516bp
CACATCCTGTGACTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTT
TTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGC
CATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTT
TGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATT
TCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGT
GTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCT
TGGCATATCAGCATTCCGTATTGACTATGCACCATATGGCCAAAGGCCAC
CTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACT
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAATC
ACTTCCAATTCAACAA
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