FC925401

Overview
NameFC925401
Unique NameFC925401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.054e-18
Identity = 39/85 (45.88%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    8 EDFQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 259
            ED ++K++++ +N+LE+YAYS++N + D +K+ GKL++ DK+ +EKAV+E +EWL+ +Q A++++F+ K KELE +  PII+K+Y
Sbjct:  552 EDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 636          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.210e-18
Identity = 39/85 (45.88%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    8 EDFQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 259
            ED ++K++++ +N+LE+YAYS++N + D +K+ GKL+  DK+ +EKAV+E +EWL+ +Q A++++F+ K KELE +  PII+K+Y
Sbjct:  551 EDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY 635          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 KAEDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 259
            K ED     +++AKN LE+YAYS++NTV D KV  KL+A DK+ +  A+D+TV W+D NQ A  +E+E + K+LE + NP++ K+Y
Sbjct:  525 KEEDEAEAGRIQAKNGLESYAYSLKNTVSDPKVEEKLSAEDKETLTGAIDKTVAWIDENQTATKEEYEAEQKQLESVANPVMMKIY 610          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    8 EDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 262
            ED + K+ + AKN LE+Y ++M+ T+ +D +  K++ +D+  I    +ET++WLD NQLA+ +E+E + KELEG+CNPII K+YQ
Sbjct:  528 EDEKQKETIAAKNGLESYCFNMKATLDEDNLKTKISDSDRTTILDKCNETIKWLDANQLADKEEYEHRQKELEGVCNPIITKLYQ 612          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 37/84 (44.05%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   11 DFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 262
            D Q + ++ AKN+LE+Y + +R+T+ D+ ++ + + AD++ I++   ET+ WLD NQLAE  EFE K +ELE +C+PII ++YQ
Sbjct:  529 DEQQRDRINAKNQLESYCFQLRSTLDDEHLSSRFSPADRETIQQRSSETIAWLDANQLAERQEFEHKQQELERICSPIITRLYQ 612          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    8 EDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 259
            ED Q  ++ +AKN LE+Y Y++RNT  + ++  KL AADK+ +EK V E +EWLD N  A  DE +DK KE+E   NPI+ K+Y
Sbjct:  526 EDKQALERTQAKNGLESYIYNVRNTTNEPQLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDELKDKQKEIEEQVNPIMTKIY 609          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 KAEDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 259
            KAED     +++AKN LE+YAYS++NT+ + ++  +++  DK+K+   +DE + WLD NQ AE DE+E + KELEG+ NPII+  Y
Sbjct:  524 KAEDEAEAARIQAKNGLESYAYSLKNTISEGQL--QISEDDKKKVSDKIDEVISWLDNNQTAEKDEYESQQKELEGVANPIISAAY 607          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 2
Query:    2 KAEDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 262
            KAED   + +V AKN LE+YA++M++ V+D+ + GKL+ ADK+K+     E + WLD N LA+ +EF  K +ELE +C+PII+ +YQ
Sbjct:  526 KAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLYQ 612          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 2
Query:    2 KAEDFQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 262
            KAED   + +V AKN LE+YA++M++ V+D+ + GKL+ ADK+K+     E + WLD N LA+ +EF  K +ELE +C+PII+ +YQ
Sbjct:  526 KAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLYQ 612          
BLAST of FC925401 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 38/86 (44.19%), Postives = 67/86 (77.91%), Query Frame = 2
Query:    8 EDFQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 262
            ED ++K++VE++N+LE+YAYS++N + D DK+  KL+  +K K+E A+DE+++WL+ N  A+ +E++ + K+LE +  P+IAK+YQ
Sbjct:  551 EDKKLKERVESRNELESYAYSLKNQIGDKDKLGAKLSDDEKNKLESAIDESIKWLEQNPDADPEEYKKQKKDLEAIVQPVIAKLYQ 636          
The following BLAST results are available for this feature:
BLAST of FC925401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
GRP78_BOVIN3.054e-1845.8878 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_RAT5.210e-1845.8878 kDa glucose-regulated protein OS=Rattus norvegi... [more]
HSP70_CLAHE1.161e-1747.67Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
HSP7D_DROME1.516e-1745.88Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP7A_DROME2.586e-1744.05Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HSP72_USTMA2.586e-1748.81Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP70_EMENI2.586e-1746.51Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HS71B_MOUSE2.586e-1747.13Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE2.586e-1747.13Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP7C_DROME3.377e-1744.19Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH12FM1 TF Citrus clementina cDNA clone KN0AAP3YH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925401 ID=FC925401; Name=FC925401; organism=Citrus clementina; type=EST; length=527bp
CAAGGCTGAAGACTTTCAAGTGAAGAAGAAGGTGGAGGCGAAGAACAAGT
TAGAGAATTACGCGTACAGTATGAGGAATACAGTGAAGGATGACAAGGTT
GCAGGAAAATTGGCCGCAGCAGACAAGCAAAAGATTGAGAAGGCAGTTGA
TGAGACTGTCGAGTGGCTTGACGGGAATCAACTGGCTGAAGTTGATGAGT
TCGAGGACAAGTTGAAGGAGTTGGAGGGCTTGTGCAATCCCATAATAGCA
AAGATGTATCAAGGTGACGGTGGGGATGTTCCAATGGGTGGCGGCTATGG
CTCCTCCGGGTCTGGTGGTTCTGGTGCCGGTGCTGGGCCTAAGATTGAGG
AAGTTGATTGAAGTTAAAACGTTGTCGCTAGGGAAGTCCTTCCTGCTATG
TTCCGTTCCTTCTGCTCTGTTTTTTCTTATGATGGTGTGTGTTGTCAAAT
GATGCAAAGGTTTAGGAATCGTTTGAGAGATAAATATACATAATGTTACG
GATGTAATTTTTTTTTCCCCCTCTTTC
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