FC925408

Overview
NameFC925408
Unique NameFC925408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 172/239 (71.97%), Postives = 200/239 (83.68%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+K GLIA
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 363.614 bits (932), Expect = 5.962e-100
Identity = 168/239 (70.29%), Postives = 202/239 (84.52%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.328e-99
Identity = 170/239 (71.13%), Postives = 199/239 (83.26%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GVV +IIHDPGRGAPLA V FR P+RY  +KELFIA EGM+TGQFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+K GLIA
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 362.073 bits (928), Expect = 1.735e-99
Identity = 167/239 (69.87%), Postives = 201/239 (84.10%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIR QRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQF+YCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   +RVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+K GLIA
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 360.147 bits (923), Expect = 6.592e-99
Identity = 167/239 (69.87%), Postives = 200/239 (83.68%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG VIRAQRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRG PLA+V FR P+R+ K+ ELFIAAEG++TGQFV+CGKKA L +GNVLPV  +PEG ++C +E   GDRG LARASG+YA +ISHNP+   +RVKLPSGAKK+I S  RA++G VAGGGR +KP+LKAG AYHK++VKRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRD P G+K GLIA
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIA 239          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.344e-96
Identity = 164/240 (68.33%), Postives = 198/240 (82.50%), Query Frame = 3
Query:    6 MGLVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG +IRAQRKG AGSVF +HTHHRKG  +FR+LD+ ER GY+KGVV EIIHDPGRGAPLARV F+   ++   K+LFIA EGM+TGQFV+ GKKATL +GN+LP+  +PEG ++CNVE  +GD G +AR SG+YA I+SHNPD   TR+KLPSG+KK + S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKVRGVAMNPVEHPHGGGNHQH+GHA+T +RD P G+K GLIA
Sbjct:    1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLIA 240          
The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_RAT5.962e-10070.2960S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB5.962e-10070.2960S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE5.962e-10070.2960S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_MAMBR5.962e-10071.9760S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_HUMAN5.962e-10070.2960S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN5.962e-10070.2960S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DROME1.328e-9971.1360S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_DANRE1.735e-9969.8760S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_ICTPU6.592e-9969.8760S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_DICDI2.344e-9668.3360S ribosomal protein L8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH16FM1 TF Citrus clementina cDNA clone KN0AAP3YH16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bp
AAGAAATGGGTCTTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAAC
CACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCTCCTGG
CCAGAAAGGTGGTCTTATTGCAGC
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