FC925408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_PETMO (50S ribosomal protein L2 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 3 Query: 69 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 668 HR G ++R +DF + VA I +DP R A +A + + +K ++ +G++ G+ V G KA + VGN LP+ +IP G +V N+E G G +A+++G YA +++ + +K+PSG + + C A IG V + + KAG ++ +R PKVRG+ NPV+HP GGG + GH Sbjct: 53 HRGGGHKRKYRIIDFKRDKINIPAKVASIEYDPNRSARIALLVYADG-----EKRYILSPKGLHVGETVMSGAKAEIKVGNSLPLENIPLGTLVHNIEFEPGRGGKIAKSAGTYAQLMA--KEGKYALLKMPSGELRRVRLSCMATIGVVGNEEHSNEVYGKAGKT--RWLGRR---PKVRGMVQNPVDHPMGGGEGRSKGH 242
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = 3 Query: 12 LVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 LV + G + K HR G + +R +DF + G VA I +DP R A +A + + +K +A +G+ G + GK+A + V N LP+ +IP G V N+E G G +AR++G + IIS ++ ++L SG + + CRA IG++ G L+ G A K + P VRG AMNP +HPHGGG Sbjct: 34 LVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3 Query: 60 HTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 H HH +R +DF + V I +DP R A LA + + +++ IAA+ + G +V G + + GN LP+R+IP G+V+ +E G LAR++G A +++ + D ++++L SG + I CRA IG+V + + KAG R P VRGVAMNPV+HPHGGG Sbjct: 58 HKHH------YRIVDFCRNKDDIPAKVERIEYDPNRSAYLALLCYADG-----ERKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 71/211 (33.65%), Postives = 105/211 (49.76%), Query Frame = 3 Query: 18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HPHGGG Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 71/211 (33.65%), Postives = 105/211 (49.76%), Query Frame = 3 Query: 18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG N + R P VRGV MNPV+HPHGGG Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 74/222 (33.33%), Postives = 108/222 (48.65%), Query Frame = 3 Query: 63 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 707 T H+ G ++R +DF + G +A I +DP R A + V + +K + A+GM G + + A + VGN P+++IPEG ++ NVE G G +AR++G I+ + D ++L SG + + + C A IG+V G E L+ G A RN W P VRG MNP +HPHGGG IG S V P G+K Sbjct: 52 TRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHPHGGGEGRTPIGRKSPV---TPWGKK 256
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_CHLP8 (50S ribosomal protein L2 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 73/241 (30.29%), Postives = 113/241 (46.89%), Query Frame = 3 Query: 3 EMGLVIRAQRKGAGSVFKSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 704 E L++ ++ G + T G +R +DF + VA I +DP R A +A + + +K +A +G+ G + G+K + VGN +P+++IP G V N+E G G +AR++G YAV+ + + T +KLPSG + + CRA IG + L KAG R+ W P+ RG+AMNPV+HP GGG + +P GQ Sbjct: 30 EKSLLVPLKKSGGRNTNGRITSRHMGGGHKRFYRLIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKGLKVGDRIESGEKVDIRVGNTMPLKNIPLGTDVHNIEMKAGKGGQMARSAGSYAVLAAREGVHAT--LKLPSGEIRKVRVECRATIGVIGNSEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BUCAP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplB PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 3 Query: 90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 +R +DF + + +DP R + +A + ++ ++ +A + + G V G+ + +GN LP+++IP G+ + NVE G G +AR++G Y +++ D + ++L SG + S CRA IG+V K L KAG A ++ P VRG AMNPV+HPHGGG ++ G Sbjct: 62 YRIIDFKRNKDNITASIERFEYDPNRSSNIALILYKDG-----KRNYILAPKNLKVGDTVISGENVPIKIGNSLPIKNIPVGSFIHNVEMRPGKGGQIARSAGSYVQLVA--CDKEYATLRLRSGEMRKTESNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGGGEGRNFG 241
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_PSINU (50S ribosomal protein L2, chloroplastic OS=Psilotum nudum GN=rpl2 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 67/197 (34.01%), Postives = 101/197 (51.27%), Query Frame = 3 Query: 63 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 + HR G + +R +DF N G +A I +DP R + + V + + K + +G+ G ++ G +A + GN +P+ IP G + N+E G G L RA+G A I++ + ++LPSG ++I C A IGQV + L KAG+ ++ KR P VRGVAMN V+HPHGGG Sbjct: 51 SRHRGGGHKRIYREIDFRRNNNDAPGKIATIEYDPNRNSYICIVNYENG-----DKRYILHPKGLNVGDLIFSGTEAPISNGNTIPLTKIPVGTFIHNIELTPGKGGQLVRAAGTVAKIMA--KEEKWATIRLPSGEFRLISKNCLATIGQVGNIDANKITLGKAGS--KRWLGKR---PIVRGVAMNSVDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21 Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 3 Query: 69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HPHGGG Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bpback to top |