FC925408

Overview
NameFC925408
Unique NameFC925408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_PETMO (50S ribosomal protein L2 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 3
Query:   69 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 668
            HR G    ++R +DF      +   VA I +DP R A +A + +        +K   ++ +G++ G+ V  G KA + VGN LP+ +IP G +V N+E   G  G +A+++G YA +++   +     +K+PSG  + +   C A IG V     + +   KAG    ++  +R   PKVRG+  NPV+HP GGG  +  GH
Sbjct:   53 HRGGGHKRKYRIIDFKRDKINIPAKVASIEYDPNRSARIALLVYADG-----EKRYILSPKGLHVGETVMSGAKAEIKVGNSLPLENIPLGTLVHNIEFEPGRGGKIAKSAGTYAQLMA--KEGKYALLKMPSGELRRVRLSCMATIGVVGNEEHSNEVYGKAGKT--RWLGRR---PKVRGMVQNPVDHPMGGGEGRSKGH 242          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = 3
Query:   12 LVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            LV    + G  +  K    HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  GK+A + V N LP+ +IP G  V N+E   G  G +AR++G +  IIS   ++    ++L SG  + +   CRA IG++   G     L+  G A  K  +     P VRG AMNP +HPHGGG
Sbjct:   34 LVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   60 HTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            H HH      +R +DF      +   V  I +DP R A LA + +        +++  IAA+ +  G +V  G  + +  GN LP+R+IP G+V+  +E   G    LAR++G  A +++   + D ++++L SG  + I   CRA IG+V       + + KAG         R   P VRGVAMNPV+HPHGGG
Sbjct:   58 HKHH------YRIVDFCRNKDDIPAKVERIEYDPNRSAYLALLCYADG-----ERKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 71/211 (33.65%), Postives = 105/211 (49.76%), Query Frame = 3
Query:   18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 71/211 (33.65%), Postives = 105/211 (49.76%), Query Frame = 3
Query:   18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 74/222 (33.33%), Postives = 108/222 (48.65%), Query Frame = 3
Query:   63 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 707
            T H+ G    ++R +DF      + G +A I +DP R A +  V +        +K   + A+GM  G  +   + A + VGN  P+++IPEG ++ NVE   G  G +AR++G    I+  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +HPHGGG     IG  S V    P G+K
Sbjct:   52 TRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDHPHGGGEGRTPIGRKSPV---TPWGKK 256          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_CHLP8 (50S ribosomal protein L2 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 73/241 (30.29%), Postives = 113/241 (46.89%), Query Frame = 3
Query:    3 EMGLVIRAQRKGAGSVFKSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 704
            E  L++  ++ G  +     T    G      +R +DF      +   VA I +DP R A +A + +        +K   +A +G+  G  +  G+K  + VGN +P+++IP G  V N+E   G  G +AR++G YAV+ +    + T  +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:   30 EKSLLVPLKKSGGRNTNGRITSRHMGGGHKRFYRLIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKGLKVGDRIESGEKVDIRVGNTMPLKNIPLGTDVHNIEMKAGKGGQMARSAGSYAVLAAREGVHAT--LKLPSGEIRKVRVECRATIGVIGNSEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BUCAP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 3
Query:   90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665
            +R +DF      +   +    +DP R + +A + ++       ++   +A + +  G  V  G+   + +GN LP+++IP G+ + NVE   G  G +AR++G Y  +++   D +   ++L SG  +   S CRA IG+V       K L KAG A     ++    P VRG AMNPV+HPHGGG  ++ G
Sbjct:   62 YRIIDFKRNKDNITASIERFEYDPNRSSNIALILYKDG-----KRNYILAPKNLKVGDTVISGENVPIKIGNSLPIKNIPVGSFIHNVEMRPGKGGQIARSAGSYVQLVA--CDKEYATLRLRSGEMRKTESNCRATIGEVGNSEHMLKVLGKAG-ASRWIGIR----PTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_PSINU (50S ribosomal protein L2, chloroplastic OS=Psilotum nudum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 67/197 (34.01%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   63 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            + HR G  +  +R +DF   N    G +A I +DP R + +  V + +       K   +  +G+  G  ++ G +A +  GN +P+  IP G  + N+E   G  G L RA+G  A I++   +     ++LPSG  ++I   C A IGQV      +  L KAG+   ++  KR   P VRGVAMN V+HPHGGG
Sbjct:   51 SRHRGGGHKRIYREIDFRRNNNDAPGKIATIEYDPNRNSYICIVNYENG-----DKRYILHPKGLNVGDLIFSGTEAPISNGNTIPLTKIPVGTFIHNIELTPGKGGQLVRAAGTVAKIMA--KEEKWATIRLPSGEFRLISKNCLATIGQVGNIDANKITLGKAGS--KRWLGKR---PIVRGVAMNSVDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 3
Query:   69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PETMO1.112e-2132.6750S ribosomal protein L2 OS=Petrotoga mobilis (str... [more]
RL2_ONYPE1.112e-2133.1850S ribosomal protein L2 OS=Onion yellows phytopla... [more]
RL2_NITEC1.112e-2134.1850S ribosomal protein L2 OS=Nitrosomonas eutropha ... [more]
RL2_NEIMF1.112e-2133.6550S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIMA1.112e-2133.6550S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_MESFL1.112e-2133.3350S ribosomal protein L2 OS=Mesoplasma florum GN=r... [more]
RL2_CHLP81.112e-2130.2950S ribosomal protein L2 OS=Chlorobaculum parvum (... [more]
RL2_BUCAP1.112e-2131.2550S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RK2_PSINU1.112e-2134.0150S ribosomal protein L2, chloroplastic OS=Psilotu... [more]
RK2_DAUCA1.112e-2133.8550S ribosomal protein L2, chloroplastic OS=Daucus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH16FM1 TF Citrus clementina cDNA clone KN0AAP3YH16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bp
AAGAAATGGGTCTTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAAC
CACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCTCCTGG
CCAGAAAGGTGGTCTTATTGCAGC
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