FC925408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3 Query: 9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 GLV ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGGG + G Sbjct: 33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3 Query: 9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 GLV ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGGG + G Sbjct: 33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3 Query: 9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 GLV ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGGG + G Sbjct: 33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRVVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3 Query: 9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 GLV ++ + G + + H+ G +R +DF + V I +DP R A +A V + ++ +A +G+ V G+K + VGN +P+R+IP G V+ N+E + R++G +A ++ DN ++L SG + + CRA+IG V+ K L KAG + R P VRGVAMNPV+HPHGGG + G Sbjct: 33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 76/226 (33.63%), Postives = 109/226 (48.23%), Query Frame = 3 Query: 15 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 680 + R R G + H R +R +DF + V + +DP R A +A +++ +K IA G+ G V G A ++ GN L ++SIP G V NVE G+ GV+AR++G YA ++S D ++L SG + + S CRA IG V+ L KAG R+ W P VRGVAMNP++HPHGGG + G + V Sbjct: 38 ISRGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHPHGGGEGKTSGGRNPV 246
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_DESVM (50S ribosomal protein L2 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 74/226 (32.74%), Postives = 108/226 (47.79%), Query Frame = 3 Query: 9 GLVIRAQRKGAGSVFKSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 665 GL ++ R G V T R+G +R +DF + VA I +DP R A +A + + +K +A G+ G V G+ A + GN +P+ IP G V+ N+E + G G RA+G YA +++ + +++PSG + + + C A IGQV L KAG RN W PKVRGVAMNP++HP GGG + G Sbjct: 36 GLTKKSGRNNNGRV----TMRRRGGGHKRLYRIIDFRRNKLGIAATVAHIEYDPNRTARIALLHYADG-----EKRYILAPLGIKQGDMVQAGEGADIKPGNAMPMARIPVGTVLHNIELYPGRGGQFCRAAGTYAQLVA--KEGKYALLRMPSGEVRKVLAACCATIGQVGNVNHENISLGKAG---------RNRWLGRRPKVRGVAMNPIDHPLGGGEGRSSG 241
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_CHLPN (50S ribosomal protein L2 OS=Chlamydia pneumoniae GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 70/210 (33.33%), Postives = 105/210 (50.00%), Query Frame = 3 Query: 69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVK----RNCW----PKVRGVAMNPVEHPHGGGNHQHIGH 668 HR G A+ +R +DF + V + +DP R A +A +++ +K +A +G+ G V G+ + G + ++SIP G V N+E G L R++G A +I+ +P T +K+PSG +++ GCRA IG+V+ NA H RV R W P VRG AMNPV+HPHGGG +H G+ Sbjct: 64 HRGGGAKQLYRVVDFKRNKDGITAKVVTVEYDPNRSAYIALLSYEDG-----EKRYILAPKGIQRGDVVVSGEGSPFKPGCCMTLKSIPLGLSVHNIEMRPSSGGKLVRSAGLAAQVIAKSPGYVT--LKMPSGEFRMLNEGCRATIGEVS-------------NADHNLRVDGKAGRRRWMGVRPTVRGTAMNPVDHPHGGGEGRHNGY 253
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BACP2 (50S ribosomal protein L2 OS=Bacillus pumilus (strain SAFR-032) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 77/222 (34.68%), Postives = 107/222 (48.20%), Query Frame = 3 Query: 3 EMGLVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 647 E L+ RKG + T +G Q+R +DF + G VA I +DP R A +A V + +K +A +G+ G V G +A + GN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HPHGGG Sbjct: 30 EKSLLAPLHRKGGRNNQGRLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVNYADG-----EKRYILAPKGIQVGTEVTSGPEADIKPGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_ACIAC (50S ribosomal protein L2 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3 Query: 18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 647 I + KG G H HH +R +DF + V I +DP R A +A V + ++ IA + G + G +A + VGN LP+R+IP G+ + +E G +AR++G A +++ + +V++ SG + I CRA IG+VA + + L KAG VKR P VRGVAMNP++HPHGGG Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPIDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 3 Query: 69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 HR G + +R +DF + G + I +DP R A + + Y ++ +I G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L + G ++R KR P VRGV MNPV+HPHGGG Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLI------HYGDGEKRYILHPKAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRVG--AKRWRGKR---PVVRGVVMNPVDHPHGGG 232 The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bpback to top |