FC925408

Overview
NameFC925408
Unique NameFC925408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3
Query:    9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665
            GLV ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:   33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3
Query:    9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665
            GLV ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:   33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3
Query:    9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665
            GLV ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:   33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRVVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3
Query:    9 GLV-IRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665
            GLV ++  + G  +  +    H+ G     +R +DF      +   V  I +DP R A +A V +        ++   +A +G+     V  G+K  + VGN +P+R+IP G V+ N+E        + R++G +A ++    DN    ++L SG  + +   CRA+IG V+      K L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:   33 GLVEVKKSKAGRNNTGRITVRHQGGGHKQHYRIVDFKRNKDDITAKVERIEYDPNRSANIALVLYADG-----ERRYIVAPKGLKKDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLV--GKDNAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG 242          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 76/226 (33.63%), Postives = 109/226 (48.23%), Query Frame = 3
Query:   15 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 680
            + R  R   G +   H   R     +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++HPHGGG  +  G  + V
Sbjct:   38 ISRGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHPHGGGEGKTSGGRNPV 246          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_DESVM (50S ribosomal protein L2 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 74/226 (32.74%), Postives = 108/226 (47.79%), Query Frame = 3
Query:    9 GLVIRAQRKGAGSVFKSHTHHRKGPAQ---FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 665
            GL  ++ R   G V    T  R+G      +R +DF      +   VA I +DP R A +A + +        +K   +A  G+  G  V  G+ A +  GN +P+  IP G V+ N+E + G  G   RA+G YA +++   +     +++PSG  + + + C A IGQV         L KAG         RN W    PKVRGVAMNP++HP GGG  +  G
Sbjct:   36 GLTKKSGRNNNGRV----TMRRRGGGHKRLYRIIDFRRNKLGIAATVAHIEYDPNRTARIALLHYADG-----EKRYILAPLGIKQGDMVQAGEGADIKPGNAMPMARIPVGTVLHNIELYPGRGGQFCRAAGTYAQLVA--KEGKYALLRMPSGEVRKVLAACCATIGQVGNVNHENISLGKAG---------RNRWLGRRPKVRGVAMNPIDHPLGGGEGRSSG 241          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_CHLPN (50S ribosomal protein L2 OS=Chlamydia pneumoniae GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 70/210 (33.33%), Postives = 105/210 (50.00%), Query Frame = 3
Query:   69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVK----RNCW----PKVRGVAMNPVEHPHGGGNHQHIGH 668
            HR G A+  +R +DF      +   V  + +DP R A +A +++        +K   +A +G+  G  V  G+ +    G  + ++SIP G  V N+E      G L R++G  A +I+ +P   T  +K+PSG  +++  GCRA IG+V+             NA H  RV     R  W    P VRG AMNPV+HPHGGG  +H G+
Sbjct:   64 HRGGGAKQLYRVVDFKRNKDGITAKVVTVEYDPNRSAYIALLSYEDG-----EKRYILAPKGIQRGDVVVSGEGSPFKPGCCMTLKSIPLGLSVHNIEMRPSSGGKLVRSAGLAAQVIAKSPGYVT--LKMPSGEFRMLNEGCRATIGEVS-------------NADHNLRVDGKAGRRRWMGVRPTVRGTAMNPVDHPHGGGEGRHNGY 253          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BACP2 (50S ribosomal protein L2 OS=Bacillus pumilus (strain SAFR-032) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 77/222 (34.68%), Postives = 107/222 (48.20%), Query Frame = 3
Query:    3 EMGLVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 647
            E  L+    RKG  +     T   +G     Q+R +DF      + G VA I +DP R A +A V +        +K   +A +G+  G  V  G +A +  GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:   30 EKSLLAPLHRKGGRNNQGRLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVNYADG-----EKRYILAPKGIQVGTEVTSGPEADIKPGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_ACIAC (50S ribosomal protein L2 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGG 647
            I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E   G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGVAMNP++HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPIDHPHGGG 235          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 3
Query:   69 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647
            HR G  +  +R +DF      + G +  I +DP R A +  +       Y   ++ +I       G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L + G    ++R KR   P VRGV MNPV+HPHGGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLI------HYGDGEKRYILHPKAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRVG--AKRWRGKR---PVVRGVVMNPVDHPHGGG 232          
The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_FRATT1.897e-2131.5350S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATN1.897e-2131.5350S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATM1.897e-2131.5350S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAT11.897e-2131.5350S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_EHRCR1.897e-2133.6350S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_DESVM1.897e-2132.7450S ribosomal protein L2 OS=Desulfovibrio vulgaris... [more]
RL2_CHLPN1.897e-2133.3350S ribosomal protein L2 OS=Chlamydia pneumoniae G... [more]
RL2_BACP21.897e-2134.6850S ribosomal protein L2 OS=Bacillus pumilus (stra... [more]
RL2_ACIAC1.897e-2133.4950S ribosomal protein L2 OS=Acidovorax avenae subs... [more]
RK2_PEA1.897e-2133.8550S ribosomal protein L2, chloroplastic OS=Pisum s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH16FM1 TF Citrus clementina cDNA clone KN0AAP3YH16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bp
AAGAAATGGGTCTTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAAC
CACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCTCCTGG
CCAGAAAGGTGGTCTTATTGCAGC
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