FC925408

Overview
NameFC925408
Unique NameFC925408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 99/240 (41.25%), Postives = 133/240 (55.42%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  I  Q +G G   +++ +H  K   +     FG     ++  V +I HDP R  P+A V      +   +KE  +  EG+  GQ +  G +AT++ GN LP+ +IP G  VCN+E   GD G   R+SG  AVII  +       V++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+K G +A
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSVA 232          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 97/240 (40.42%), Postives = 137/240 (57.08%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  +  QR G G++ F++    R G  ++ ++      G+    V +I+H+PG   P+A+V      ++        A +G+ +GQ +  G+ +   +GN++P + +PEG  V NVE H GD G  AR +G YA+++  +      R  LPSG  K I       +G VAGGG  EKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +  +STV R+ PPG+K G IA
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTI-----TGHHIAKVVDILHNPGMTEPVAKVKLDTGIQFF-----IPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHIA 228          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.676e-41
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 3
Query:  129 KGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAK 470
            +G+V  I HDPGRGAPLARV FR+P +Y   KELFI AEG+Y+GQ++YCG KA+L +GNVLP+   PEG VVCNVE   GDRG++ARASG+YA +ISHN DN+TTR++LPSGAK
Sbjct:   33 RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.397e-40
Identity = 93/240 (38.75%), Postives = 136/240 (56.67%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG     +R+G G + F++ T  +   A++ + + GE+    +G V +++H+ GR APLA++ F              A  G   G  +  G K+ +  GNV+ V++IP+G  VCNVE H GD G + +++G  A + SH        +KLPSG    +    RAM+G +AGGG +E+P + AG  + +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG K G IA
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGGVV--LKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSIA 230          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 92/240 (38.33%), Postives = 129/240 (53.75%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  I  Q +G G   +++ +H  K   +      G+    + G + +I HDP R AP+A V           K   +  EG+  G+ V  G    +  GN LP++SIP G+ +CN+E    D G   R++G  AV++  +   D   V++PSG  K   + CRA +G VAGGGR EKP +KAGN  HK R   + WP+VRGVAMN ++HP GGG HQH G   T+ R   PG+  G +A
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDG-----SKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVGHVA 229          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 91/237 (38.40%), Postives = 136/237 (57.38%), Query Frame = 3
Query:   15 VIRAQRKGAGSVFKSHTHHRKGP-AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            ++R + +G G+ F+S +  + G  A +      E++   +G + +++H+ GR APLA+V F              A  G   G+ +  G K+ +  GNV+ +++IP+G +VCN+E H GD G + +++G  A + SH  +  T  VKLPSG    +    RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG K G IA
Sbjct:    6 LVRRRGRG-GNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG-----SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSIA 231          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 90/236 (38.14%), Postives = 123/236 (52.12%), Query Frame = 3
Query:   18 IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            I AQ +G G   +++ +H  K   +      G+ +  + G V +I HDP R AP+A            +K   +A EG+  G  V  G   T+  GN LP+  IP GA VCN+E    D G   R+SG  A++I    D+    +++PSG  K     C A +G VAGGGR EKP +KAG  +   R     WP+V+GV MN ++HP GGG HQH G   TV R   PG+K G +A
Sbjct:    5 IIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPKTVARGTSPGRKVGHVA 230          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 92/240 (38.33%), Postives = 123/240 (51.25%), Query Frame = 3
Query:    6 MGLVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  I  Q +G  G  +++ +H  K   +      G     +   + +I HDP R  P+A V          +    +  EGM  G  +  G  A +  GN LP++ IP G+ VCN+E +  D G   RASG  A +           V++PSG+ K     CRA IG VAGGGR+EKP +KAG  YHK +   + WP+VRG AMN ++HP GGG HQH G   TV R   PG+K G IA
Sbjct:    1 MGHRITTQSRGHGGPTYRAPSHRYKAALKH----LGRAGETVSYKIIDIEHDPARHTPIALVDVPDG-----ENTYVLVTEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHIA 229          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 97/240 (40.42%), Postives = 130/240 (54.17%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  I  QR+G GS V++S +H        + L  GE       VV +IIH PGR +PL  +          +K   IA  G Y GQ +  G   T+  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG+ +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+K G ++
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHV--VDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLS 224          
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.370e-37
Identity = 94/240 (39.17%), Postives = 130/240 (54.17%), Query Frame = 3
Query:    6 MGLVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722
            MG  I  QR+G GS V++S +H      + + +D G        V+ +IIH PGR APL  +          +K   IA  G + GQ +  G   ++  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG  +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+K G ++
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHI--TEVKHVDQGTY------VIKDIIHAPGRNAPLLELMGSDG-----KKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLS 224          
The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METLZ3.007e-4341.2550S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_METS51.949e-4240.4250S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL8_ENTHI3.676e-4166.6760S ribosomal protein L8 (Fragment) OS=Entamoeba h... [more]
RL2_CENSY1.397e-4038.7550S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_METB61.825e-4038.3350S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_NITMS5.308e-4038.4050S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_METMJ4.969e-3838.1450S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_METHJ4.969e-3838.3350S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_THEVO6.489e-3840.4250S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THEAC9.370e-3739.1750S ribosomal protein L2P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH16FM1 TF Citrus clementina cDNA clone KN0AAP3YH16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bp
AAGAAATGGGTCTTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAAC
CACCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCTCCTGG
CCAGAAAGGTGGTCTTATTGCAGC
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