FC925408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.598e-36 Identity = 94/240 (39.17%), Postives = 129/240 (53.75%), Query Frame = 3 Query: 6 MGLVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLIA 722 MG I AQR+G GS V++S +H G ++ R+G K + +II PGR P+ + +K IA G Y Q ++ G + +G+V + +IP+G+ V N+E GD G RA+G A++ISH +KLPSG K CRA +G +AG G + P+LKAG + K VRGVAMN V HPHGGGNHQH+G STV R PPG+K G ++ Sbjct: 1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVGRLS 224
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.937e-35 Identity = 93/240 (38.75%), Postives = 129/240 (53.75%), Query Frame = 3 Query: 6 MGLV-IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKGGLI 719 MG V + QR+G GS F+S TH G + + D +KG V +I D APL V + + + L A G+ G VY GK+A +G++ P+ IPEG + +E++ GD G L RASGD+A+++ D V+LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +HP GG H + TV + APPG+K G I Sbjct: 1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27 Identity = 81/222 (36.49%), Postives = 121/222 (54.50%), Query Frame = 3 Query: 9 GLVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 G V RA R +G SV + H++ ++R +DF R+ + + VA I +DP R +A + +R K IA +G+ G + G A + +GN LP+ +IP G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HPHGGG + G Sbjct: 37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27 Identity = 81/222 (36.49%), Postives = 121/222 (54.50%), Query Frame = 3 Query: 9 GLVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 G V RA R +G SV + H++ ++R +DF R+ + + VA I +DP R +A + +R K IA +G+ G + G A + +GN LP+ +IP G +V N+E ++G G L R +G YA+II+ D D VKLPSG ++I C A +G+V + KAG + ++ +R PKVRGVAMNP++HPHGGG + G Sbjct: 37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHPHGGGEGKTSG 243
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26 Identity = 71/193 (36.79%), Postives = 103/193 (53.37%), Query Frame = 3 Query: 87 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 Q+R +DF + VV + +DP R A +A V ++ ++ +AA+G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + IP+ CRA +G+V + L KAG A R P VRG AMNPV+HPHGGG ++ G Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.340e-26 Identity = 81/230 (35.22%), Postives = 119/230 (51.74%), Query Frame = 3 Query: 3 EMGLVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 668 E LV+ + G +V+ T HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G + G+ + VGN LP+R+IP G ++ N+E G G L RA+G A +++ + D +V++PSG ++I + CRA IGQV+ + KAG R+ W P VRG AMNPV+HPHGGG + IGH Sbjct: 30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.340e-26 Identity = 81/230 (35.22%), Postives = 119/230 (51.74%), Query Frame = 3 Query: 3 EMGLVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQ-HIGH 668 E LV+ + G +V+ T HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G + G+ + VGN LP+R+IP G ++ N+E G G L RA+G A +++ + D +V++PSG ++I + CRA IGQV+ + KAG R+ W P VRG AMNPV+HPHGGG + IGH Sbjct: 30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGGGEGKAPIGH 243
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.363e-26 Identity = 80/235 (34.04%), Postives = 116/235 (49.36%), Query Frame = 3 Query: 12 LVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTVRRDAPPGQK 707 LVI + G + K H+ G + +R +DF + V I +DP R A + + + +K +A EG+ GQ V G ++VGN LP+ +IPEG V NVE G G++AR++G A I+ + D ++L SG + I + CRA IG V G + L KAG + H P VRG MNP++HPHGGG + Q IG + + P G+K Sbjct: 35 LVILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHPHGGGVSKQPIGRKAPL---TPWGKK 256
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26 Identity = 76/215 (35.35%), Postives = 110/215 (51.16%), Query Frame = 3 Query: 15 VIRAQRKGAGSVFKSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 647 ++ RK AG F+ HR G + +R +DF + G VA I +DP R A +A V + +K +A G+ GQ + G +A + VGN LP+R+IP G ++ N+E + G + R++G A +++ + D V+LPSG ++ P CRA IGQV + KAG A P VRGV MNPV+HPHGGG Sbjct: 33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHPHGGG 235
BLAST of FC925408 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 87 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 665 Q+R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A R P VRG AMNPV+HPHGGG ++ G Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241 The following BLAST results are available for this feature:
BLAST of FC925408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925408 ID=FC925408; Name=FC925408; organism=Citrus clementina; type=EST; length=724bpback to top |