FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.864e-64
Identity = 121/163 (74.23%), Postives = 137/163 (84.05%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            TA+ +KIPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVFIDEIDAV           NDEREQT+NQLLTEMDGF GN+GVIV+AATNR D+LDSALLRPGRFDRQV+VD PD  GR+ IL VH++ K +
Sbjct:  199 TAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKM 361          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.997e-63
Identity = 121/161 (75.16%), Postives = 135/161 (83.85%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGK 484
            TA+ ++IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+GVIV+AATNR D+LDSALLRPGRFDRQV+VD PDV GR  IL VHS  K
Sbjct:  246 TAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNK 406          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.608e-63
Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGK 484
            TA+ ++IPKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDRQV+VD PDV GR +IL VH   K
Sbjct:  240 TAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNK 400          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.608e-63
Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGK 484
            TA+ +KIPKG LL+GPPGTGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVF+DEIDAV           NDEREQT+NQLLTEMDGF GN+GVIV+AATNR D+LDSALLRPGRFDRQV+VD PDV GR  IL VH+  K
Sbjct:  253 TAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNK 413          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.407e-63
Identity = 118/163 (72.39%), Postives = 137/163 (84.05%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            +AL +KIPKG LL GPPGTGKTLLA+A+AGEAGVPFFS + SEF+E+FVGVGASR RDLF KAK+ +PCIVFIDEIDAV           NDEREQT+NQ+LTEMDGF+GN+GVIV+AATNRP++LDSALLRPGRFDRQV+V  PD+ GR +IL VHSR K L
Sbjct:  250 SALGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKL 412          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.407e-63
Identity = 120/163 (73.62%), Postives = 136/163 (83.44%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            TA+ +KIPKG LLVGPPGTGKTLLA+A+AGEA VPFFS + SEFVE+FVGVGASRVRDLF+KAK  APCIVFIDEIDAV           NDEREQT+NQLLTEMDGF GN+GVIV+AATNR D+LDSALLRPGRFDRQV+VD PD  GR+ IL VH++ K +
Sbjct:  199 TAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKM 361          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.869e-61
Identity = 115/163 (70.55%), Postives = 134/163 (82.21%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            +A+ ++IPKG LLVGPPGTGKTLLARAVAGEAGVPFFS + S+FVE+FVGVGASRVRDLFE AK  APCI+FIDEIDAV           +DEREQT+NQLL EMDGFS N G+I++AATNR D+LD ALLRPGRFDRQ+ V+RPDV GR ++L VH+R K L
Sbjct:  192 SAIGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPL 354          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.164e-61
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L ++IPKG LLVGPPGTGKTLLA+A AGEAGVPFFS + S+FVE+FVGVGASRVRDLFE AK  APC++FIDEIDAV           +DEREQT+NQLL EMDGFS N G+I++AATNR D+LD ALLRPGRFDRQ+TVDRPDV GR  +L VH+R K L
Sbjct:  189 LGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPL 349          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.212e-60
Identity = 110/155 (70.97%), Postives = 127/155 (81.94%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L  KIPKGCLL+GPPGTGKTLLA+A+AGEA VPFFS + S+FVE+FVGVGASRVRD+FE+ K  APCI+FIDEIDAV           NDEREQT+NQ+L EMDGF  N GV+++AATNRPDVLD+ALLRPGRFDRQ+TV  PD+ GR KIL VH
Sbjct:  183 LGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVH 337          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.067e-60
Identity = 116/162 (71.60%), Postives = 131/162 (80.86%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            A+ + IPKG LLVGPPGTGKTLLA+A+AGEA VPFFS + SEFVE+FVGVGASRVRDLF+KAK  APC+VFIDEIDAV           NDEREQT+NQLLTEMDGF GN+GVIV+AATNR DVLD+ALLRPGRFDRQ+ V  PDV  R+ IL VH+  K L
Sbjct:  181 AVGASIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKL 342          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_PORPU6.864e-6474.23Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH8_ARATH1.997e-6375.16Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ2.608e-6373.91Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH2_ARATH2.608e-6374.53Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH3.407e-6372.39Cell division protease ftsH homolog 6, chloroplast... [more]
FSTH_PORYE3.407e-6373.62Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_BACPF1.869e-6170.55Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_BACSU4.164e-6170.81Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_RICBR1.212e-6070.97Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_CYAME2.067e-6071.60Cell division protease ftsH homolog OS=Cyanidiosch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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