FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.067e-60
Identity = 117/163 (71.78%), Postives = 134/163 (82.21%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T + + IPKG LLVGPPGTGKTLLA+A+AGEA  PFFS + SEFVE+FVGVGASRVRDLF+KAK KAPCIVFIDEIDAV           NDEREQT+NQLLTEMDGFSG++GVIV+AATNR DVLDSALLRPGRFDRQ+ V  P++ GR+ IL VHS+ K +
Sbjct:  197 TNVGATIPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKI 359          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.525e-60
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            AL +KIPKG LL GPPGTGKTLLARAVAGEAGVPFF+ + S+FVE+FVGVGASRVRDLFE+AK  +PCI+F+DEIDAV           +DEREQT+NQLL EMDGF   +GVI++AATNRPD+LD ALLRPGRFDRQ+ V  PD+AGR  +L VHS+GK +
Sbjct:  190 ALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPM 351          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.525e-60
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            AL +KIPKG LL GPPGTGKTLLARAVAGEAGVPFF+ + S+FVE+FVGVGASRVRDLFE+AK  +PCI+F+DEIDAV           +DEREQT+NQLL EMDGF   +GVI++AATNRPD+LD ALLRPGRFDRQ+ V  PD+AGR  +L VHS+GK +
Sbjct:  190 ALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPM 351          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.525e-60
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            AL +KIPKG LL GPPGTGKTLLARAVAGEAGVPFF+ + S+FVE+FVGVGASRVRDLFE+AK  +PCI+F+DEIDAV           +DEREQT+NQLL EMDGF   +GVI++AATNRPD+LD ALLRPGRFDRQ+ V  PD+AGR  +L VHS+GK +
Sbjct:  190 ALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPM 351          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.750e-59
Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T + +KIPKG LLVGPPGTGKTLLA+A+A EA VPFFS A SEFVE+F+G+GA+RVRDLF+KA   APCIVFIDEIDAV           NDEREQT+NQLLTEMDGF  N GVIV+ ATNR D+LD+ALLRPGRFDRQVTV+ PD  GRV IL VH+R K L
Sbjct:  212 TIVGAKIPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPL 374          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.285e-59
Identity = 110/161 (68.32%), Postives = 131/161 (81.37%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +KIPKG LL GPPGTGKTLLARAVAGEAGVPFF+ + S+FVE+FVGVGASRVRDLF++AK  +PCI+F+DEIDAV           +DEREQT+NQLL EMDGF   +GVI++AATNRPD+LD ALLRPGRFDRQ+ V  PD+AGR  +L VHS+GK +
Sbjct:  191 LGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPI 351          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.898e-59
Identity = 113/164 (68.90%), Postives = 135/164 (82.32%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            TA+ ++ PKG LLVGPPGTGKTLLA+A+AGEAGVPFFS + SEF+E+FVGVGASRVRDLF++AK+ APC+VFIDEIDAV           NDEREQT+NQLLTEMDGF  G+ GV+V+AATNRP++LD+ALLRPGRFDR+V+V  PDV GR +IL VH   K L
Sbjct:  247 TAVGARTPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRL 410          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.091e-59
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L  KIPKGCLL+GPPGTGKTLLA+A+AGEA VPFFS + S+FVE+FVGVGASRVRD+FE+ K  APCI+FIDEIDAV           NDEREQT+NQ+L EMDGF  N GV+++AATNRPDVLD ALLRPGRFDRQ+ V  PD+ GR +IL VH
Sbjct:  183 LGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVH 337          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.091e-59
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L  KIPKGCLL+GPPGTGKTLLA+A+AGEA VPFFS + S+FVE+FVGVGASRVRD+FE+ K  APCI+FIDEIDAV           NDEREQT+NQ+L EMDGF  N GV+++AATNRPDVLD ALLRPGRFDRQ+ V  PD+ GR +IL VH
Sbjct:  183 LGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVH 337          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.091e-59
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L  KIPKGCLL+GPPGTGKTLLA+A+AGEA VPFFS + S+FVE+FVGVGASRVRD+FE+ K  APCI+FIDEIDAV           NDEREQT+NQ+L EMDGF  N GV+++AATNRPDVLD ALLRPGRFDRQ+ V  PD+ GR +IL VH
Sbjct:  183 LGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVH 337          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_CYACA2.067e-6071.78Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_MYCTU3.525e-6069.14Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA3.525e-6069.14Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO3.525e-6069.14Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_ODOSI1.750e-5970.55Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_MYCLE2.285e-5968.32Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH6_ORYSJ3.898e-5968.90Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_RICTY5.091e-5969.68Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR5.091e-5969.68Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE5.091e-5969.68Cell division protease ftsH homolog OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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