FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.091e-59
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L  KIPKGCLL+GPPGTGKTLLA+A+AGEA VPFFS + S+FVE+FVGVGASRVRD+FE+ K  APCI+FIDEIDAV           NDEREQT+NQ+L EMDGF  N GV+++AATNRPDVLD ALLRPGRFDRQ+ V  PD+ GR +IL VH
Sbjct:  183 LGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVH 337          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 8.683e-59
Identity = 112/157 (71.34%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLARA+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APC++FIDEIDAV           +DEREQT+NQ+L EMDGFSGN GVIV+AATNRPDVLD AL RPGRFDRQV V  PDV GR +IL VH R
Sbjct:  179 LGGKIPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMR 335          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.481e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.481e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.481e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.481e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.481e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE+AK  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.300e-58
Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            TAL +KIPKG LLVGPPGTGKTLLA+A AGEAGVPFF  + SEFVELFVG GA+RVRDLFE+AK +APCIVFIDE+DA+            NDEREQT+NQLLTEMDGFS   + VIVLAATNRP+ LD ALLRPGRFDRQV VDRPD+AGR+KIL ++++
Sbjct:  200 TALGAKIPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAK 360          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.351e-58
Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T L ++IP G LL GPPGTGKTLLA+AVAGEAGVPFFS + S+FVE+FVGVGASRVR LFE AK  AP I+FIDEIDAV           NDEREQT+NQLL EMDGF GN G+IV+AATNR DVLD ALLRPGRFDR+V V RPDV GR  IL VH++ K L
Sbjct:  213 TKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPL 375          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 7.351e-58
Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T L ++IP G LL GPPGTGKTLLA+AVAGEAGVPFFS + S+FVE+FVGVGASRVR LFE AK  AP I+FIDEIDAV           NDEREQT+NQLL EMDGF GN G+IV+AATNR DVLD ALLRPGRFDR+V V RPDV GR  IL VH++ K L
Sbjct:  213 TKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPL 375          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_RICCN5.091e-5969.68Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH1_HAEIN8.683e-5971.34Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_SHIFL1.481e-5870.70Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY1.481e-5870.70Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI1.481e-5870.70Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI1.481e-5870.70Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.481e-5870.70Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH3_SYNY33.300e-5872.05Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_STRR67.351e-5869.94Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN7.351e-5869.94Cell division protease ftsH homolog OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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