FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  272 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            N+++   ++QLL E+DG  G +GV++  ATNRP+VLD ALLRPGRFD+ V V  P    RV+IL  + +
Sbjct: 1148 NEKQVSLLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQFYGQ 1216          

HSP 2 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   20 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 238
            +P G LL GPPGTGKTLL +A+AGEA VP    + S  +E      A +++ +F++A+  APCIVFIDEID +
Sbjct: 1006 LPHGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEPGES-AAFKLQLVFQEARQLAPCIVFIDEIDTL 1077          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   20 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEID-AVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKIL 463
            +P+  LL GP GTGKTLL R +A + G  FF  A S  V  ++G     +   F  A+ + P ++F+ +ID  +           +  R + + QL T +   S    ++V+ AT++P+ +D +L R   F +++ +  PD   R +I+
Sbjct:  518 LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLT--SAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII 662          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YCF46_PORPU (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra purpurea GN=ycf46 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 48/150 (32.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            PKG LLVG  GTGK+L A+A+A +  +P       +     VG   SR+R++   A+  +PC+++IDEID                R       +T +      + V V+A  N    L S +LR GRFD    +D P+   R  I  +H
Sbjct:  259 PKGLLLVGIQGTGKSLTAKAIANDWTLPLLRLDIGKLFGGLVGESESRMREMVTIAEGLSPCVLWIDEIDKAFSNLYSQGDSGTSAR--VFGTFITWLS--EKTTPVFVVATANTIQNLPSEMLRKGRFDEIFFLDLPNNEERELIFQIH 404          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   26 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 238
            KG LL GPPGTGKTLLA+AVA E    FF+ +AS  V  + G     VR LFE A+  AP  +F+DE+++V
Sbjct:  292 KGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESV 362          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   20 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEID-AVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKIL 463
            +P+  LL GP GTGKTLL R +A + G  FF  A S  V  ++G     +   F  A+ + P ++F+ +ID  +           +  R + + QL T +   S    ++V+ AT++P+ +D +L R   F +++ +  PD   R +I+
Sbjct:  518 LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLT--SAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII 662          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_CHLVU1.229e-1249.28Cell division protease ftsH homolog OS=Chlorella v... [more]
FIGN_MOUSE1.229e-1229.53Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
YCF46_PORPU1.605e-1232.00Uncharacterized AAA domain-containing protein ycf4... [more]
KATL2_XENLA2.096e-1252.11Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FIGN_HUMAN2.096e-1229.53Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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