FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.254e-57
Identity = 110/157 (70.06%), Postives = 126/157 (80.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE A+  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN GVI++AATNRPDVLD ALLRPGRFDRQV V  PDV GR +IL VH R
Sbjct:  180 LGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 4.765e-57
Identity = 107/157 (68.15%), Postives = 126/157 (80.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE ++  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+I++AATNRPDVLD ALLRPGRFDRQV V  PD+ GR +IL VH R
Sbjct:  180 LGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMR 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.386e-56
Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L  KIPKG L+VGPPGTGKTLLA+A+AGEA VPFF+ + S+FVE+FVGVGASRVRD+FE ++  APCI+FIDEIDAV           +DEREQT+NQ+L EMDGF GN G+I++AATNRPDVLD ALLRPGRFDRQ+ V  PD+ GR KI+ VH +
Sbjct:  180 LGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMK 336          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 108/163 (66.26%), Postives = 129/163 (79.14%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T +  KIP+G LLVGPPGTGKTLLARAVAGEA VPFF  + S+F+E+FVG+GASRVRDLF++A+ KAP I+FIDE+DA+           NDEREQT+NQLL EMDGF   +G+I+LAATNRPDVLD ALLRPGRFDRQV VDRPD+ GR  IL +H++   L
Sbjct:  167 TEIGGKIPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAI-GKSRLNAIHSNDEREQTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKL 328          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 2.614e-55
Identity = 113/163 (69.33%), Postives = 129/163 (79.14%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +KIPKG LLVGPPGTGKTLLA+AVAGEA VPFFS   S F+E+FVG+GASRVRDLFE AK +AP I+FIDEIDA+            NDEREQT+NQLL EMDGF S N+ VIVLAATNRP++LD AL+RPGRFDRQV VD+PD  GRV+IL VH +G  L
Sbjct:  198 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL 360          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.614e-55
Identity = 113/163 (69.33%), Postives = 129/163 (79.14%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +KIPKG LLVGPPGTGKTLLA+AVAGEA VPFFS   S F+E+FVG+GASRVRDLFE AK +AP I+FIDEIDA+            NDEREQT+NQLL EMDGF S N+ VIVLAATNRP++LD AL+RPGRFDRQV VD+PD  GRV+IL VH +G  L
Sbjct:  198 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL 360          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.298e-54
Identity = 111/158 (70.25%), Postives = 127/158 (80.38%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            +L +KIPKG LLVGPPGTGKTLLA+AVAGEA VPFFS   S F+E+FVG+GASRVRDLF+ AK +AP I+FIDEIDA+            NDEREQT+NQLL EMDGF S N+ VIVLAATNRP++LD ALLRPGRFDRQV VD+PD  GRV+IL VH
Sbjct:  203 SLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVH 360          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.931e-54
Identity = 112/163 (68.71%), Postives = 126/163 (77.30%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGF--SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L ++IP G LL GPPGTGKTLLA+AVAGEAGVPF+S + S+FVE+FVGVGASRVRDLFE AK  AP I+FIDEIDAV           NDEREQT+NQLL EMDGF   GNS VIV+AATNR DVLD ALLRPGRFDR+V V  PDV GR  +L VH++ K L
Sbjct:  221 LGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNS-VIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPL 382          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.435e-53
Identity = 99/155 (63.87%), Postives = 122/155 (78.71%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L +KIPKG LLVGPPGTGKTLLA+A AGE+GVPF S + S+F+E+FVGVG SRVR LF++A+  AP I+FIDEIDA+           NDERE T+NQLL EMDGF   +GV+VLA TNRPD+LD ALLRPGRFDRQ+T+D+PD+ GR +I  ++
Sbjct:  350 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIY 504          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.447e-53
Identity = 105/162 (64.81%), Postives = 124/162 (76.54%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L  + PKG LL G PG GKTLLA+A+AGEA VPF S + S+FVE+FVGVGA+RVRDLFE AK  APCI+FIDEIDAV            +DEREQT+NQLL EMDGF  + G+IV+AATNRPD+LD ALLRPGRFDRQ+ + +PDV GR +IL VH+R K L
Sbjct:  183 LGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKL 344          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH_BUCAP1.254e-5770.06Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAI4.765e-5768.15Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCBP1.386e-5666.88Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_TREPA5.268e-5666.26Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_HELPY2.614e-5569.33Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ2.614e-5569.33Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE1.298e-5470.25Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_LACLA4.931e-5468.71Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSH3_ARATH1.435e-5363.87Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH_AQUAE2.447e-5364.81Cell division protease ftsH homolog OS=Aquifex aeo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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